Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP12_F_F15
         (855 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB17E12.13 |rpl1802|rpl18-2|60S ribosomal protein L18|Schizos...   120   2e-28
SPBC11C11.07 |rpl1801|rpl18-1, rpl18|60S ribosomal protein L18|S...   118   1e-27
SPAC19B12.01 ||SPAC4F10.21|TPR repeat protein, TTC27 family|Schi...    31   0.21 
SPAC5D6.07c |||PXA domain protein|Schizosaccharomyces pombe|chr ...    28   1.9  
SPBC30D10.17c |||glucan synthase regulator |Schizosaccharomyces ...    27   2.6  
SPAC14C4.10c |||Nudix family hydrolase|Schizosaccharomyces pombe...    27   3.4  
SPBC29A10.09c |||CAF1 family ribonuclease|Schizosaccharomyces po...    26   5.9  
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    26   7.8  
SPCC4G3.03 |||WD repeat protein|Schizosaccharomyces pombe|chr 3|...    26   7.8  

>SPAPB17E12.13 |rpl1802|rpl18-2|60S ribosomal protein
           L18|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 187

 Score =  120 bits (290), Expect = 2e-28
 Identities = 62/113 (54%), Positives = 81/113 (71%), Gaps = 2/113 (1%)
 Frame = +2

Query: 290 RSQLVSGLIAVVVGTVTNDVRLYKIPKMTVAALHVTEKARARILAAGGEILTFDQLALRA 469
           +S  + G   V+VGTVT+D RL  +PK++VAAL  T+ ARARIL AGGE+LT DQLALRA
Sbjct: 73  KSASLEGKTTVIVGTVTDDERLLTVPKLSVAALRFTKSARARILKAGGEVLTLDQLALRA 132

Query: 470 PTGKKTVLVQGQRNAREAVRHFGPAPGAPXSHTKXYVRTKGH--EKARXXRRA 622
           PTG  TVL++G+++AREA RHFG     P  H   YVR++G   E+AR  R++
Sbjct: 133 PTGSNTVLLRGKKHAREAYRHFG---FGPHKHKAPYVRSEGRKFERARGRRKS 182



 Score = 46.8 bits (106), Expect = 4e-06
 Identities = 18/32 (56%), Positives = 28/32 (87%)
 Frame = +1

Query: 184 AXRTNAKFNQXVLRRLFMSRINRPPISVSRLA 279
           A RT+++FN+ +L+RLF S+ NRPPIS+S++A
Sbjct: 36  ARRTDSRFNKAILKRLFQSKTNRPPISISKIA 67


>SPBC11C11.07 |rpl1801|rpl18-1, rpl18|60S ribosomal protein
           L18|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 187

 Score =  118 bits (284), Expect = 1e-27
 Identities = 60/103 (58%), Positives = 77/103 (74%), Gaps = 2/103 (1%)
 Frame = +2

Query: 320 VVVGTVTNDVRLYKIPKMTVAALHVTEKARARILAAGGEILTFDQLALRAPTGKKTVLVQ 499
           VVVGTVT+D R+  +PK+++AAL  T+ ARARIL AGGE+LT DQLALRAPTG  TVLV+
Sbjct: 83  VVVGTVTDDERMLTVPKLSIAALRFTKSARARILKAGGEVLTLDQLALRAPTGSNTVLVR 142

Query: 500 GQRNAREAVRHFGPAPGAPXSHTKXYVRTKGH--EKARXXRRA 622
           G+++AREA RHFG     P  H   YVR++G   E+AR  R++
Sbjct: 143 GKKHAREAYRHFG---FGPHKHKAPYVRSEGRKFERARGRRKS 182



 Score = 46.8 bits (106), Expect = 4e-06
 Identities = 18/32 (56%), Positives = 28/32 (87%)
 Frame = +1

Query: 184 AXRTNAKFNQXVLRRLFMSRINRPPISVSRLA 279
           A RT+++FN+ +L+RLF S+ NRPPIS+S++A
Sbjct: 36  ARRTDSRFNKAILKRLFQSKTNRPPISISKIA 67


>SPAC19B12.01 ||SPAC4F10.21|TPR repeat protein, TTC27
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 817

 Score = 31.1 bits (67), Expect = 0.21
 Identities = 25/87 (28%), Positives = 43/87 (49%), Gaps = 1/87 (1%)
 Frame = +2

Query: 293 SQLVSGLIAVVVGTVTNDVRLYKI-PKMTVAALHVTEKARARILAAGGEILTFDQLALRA 469
           +++++ L+ +VV  +TNDVRL++I  +  +   H  E   A  L A   +++   +    
Sbjct: 688 ARMLNELLKMVVPLITNDVRLWRIVARYYLWRRHFAESLNA-TLKAYRILISSPNVTSDE 746

Query: 470 PTGKKTVLVQGQRNAREAVRHFGPAPG 550
            T  KT  V+G     EA  + G  PG
Sbjct: 747 ATWNKT--VEGALELVEAYANLGEMPG 771


>SPAC5D6.07c |||PXA domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 495

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = +2

Query: 344 DVRLYKIPKMTVAALHVTEKARARILAAGGEILTFDQL 457
           D+  Y+IP + +  +  TE+A+ R     G+IL  D +
Sbjct: 59  DLLFYEIPFLLIKHIENTEEAKLRFALPQGQILEIDTI 96


>SPBC30D10.17c |||glucan synthase regulator |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 504

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = -3

Query: 445 SKNFSSSSQNACTSFFGNMKSSHRH 371
           SKN  SS  N+ TSFF ++ + +RH
Sbjct: 2   SKNSFSSMANSVTSFFQSLTTPNRH 26


>SPAC14C4.10c |||Nudix family hydrolase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 329

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 14/51 (27%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
 Frame = +3

Query: 423 LLEEKFLLLISWLFVLRLARRQY----WYKVSEMLVRQCVTLXLLQEHRAL 563
           LL   F+ ++ ++  LRL   +     WY ++++L+ +C T   +   RAL
Sbjct: 134 LLLSSFVFILPYMPSLRLQESEVFSAQWYPLADLLLPECQTRIQIDSSRAL 184


>SPBC29A10.09c |||CAF1 family ribonuclease|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 427

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 14/38 (36%), Positives = 23/38 (60%)
 Frame = -3

Query: 442 KNFSSSSQNACTSFFGNMKSSHRHLRYLVQSHVICDCP 329
           KN+ SS  +  TS + N+ +S+R +R  +QS V  + P
Sbjct: 170 KNWLSSELSHSTSKYLNITTSNRFIRKAIQSLVKIEFP 207


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 20/77 (25%), Positives = 35/77 (45%)
 Frame = -3

Query: 517 TSISLTLYQYCLLASRSTKSQLIKSKNFSSSSQNACTSFFGNMKSSHRHLRYLVQSHVIC 338
           +S S + +   + +S ST S  + S + SSSS+ A +S   +  SSH+       S    
Sbjct: 361 SSKSSSSFSSTVSSSSSTSSSTLTSSS-SSSSRPASSSSHSSSLSSHKSSSSSKSSSAPV 419

Query: 337 DCPHYHGNQTTHELASS 287
               YH + ++   + S
Sbjct: 420 SSAFYHNSTSSRSSSHS 436


>SPCC4G3.03 |||WD repeat protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 347

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 4/67 (5%)
 Frame = +1

Query: 217 VLRRLFMSRINRPPISVSRLARHM----KKPTREWFDCRGSGDSHK*RETVQDTEDDGGC 384
           +LR+     +N    SVS   R M      P   +++   SG+ H    TV DT D   C
Sbjct: 150 LLRKQLHFPVNMNHASVSNDGRFMVCVGDSPQVFFYEIDRSGEYHLRHTTVADTTDSSFC 209

Query: 385 SSCYRKS 405
           +S  +++
Sbjct: 210 TSISQRN 216


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,382,087
Number of Sequences: 5004
Number of extensions: 44966
Number of successful extensions: 132
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 424464280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)