Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP12_F_F15
(855 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1667 + 28484069-28484071,28484151-28484240,28484339-284844... 145 3e-35
05_01_0401 + 3169979-3169981,3170071-3170160,3170556-3170684,317... 144 1e-34
03_02_0954 - 12687373-12687582,12688885-12689067,12689160-126892... 126 3e-29
12_01_0584 - 4762476-4762613,4763986-4764075,4765048-4765146,476... 31 1.5
04_03_0468 + 16249716-16249822,16250080-16250233,16250788-16251138 29 6.2
03_06_0500 - 34361139-34362006,34362295-34362818,34362908-343631... 29 6.2
11_01_0520 + 4078075-4078198,4078726-4078957,4079068-4079147,407... 28 8.3
>07_03_1667 +
28484069-28484071,28484151-28484240,28484339-28484491,
28484575-28484757,28486137-28486295
Length = 195
Score = 145 bits (352), Expect = 3e-35
Identities = 71/105 (67%), Positives = 85/105 (80%), Gaps = 2/105 (1%)
Frame = +2
Query: 314 IAVVVGTVTNDVRLYKIPKMTVAALHVTEKARARILAAGGEILTFDQLALRAPTGKKTVL 493
IAV+VGTVT+D R+Y++P M VAAL TE ARARI+ AGGE LTFDQLALRAP G+ TVL
Sbjct: 86 IAVIVGTVTDDKRIYEVPAMKVAALRFTETARARIINAGGECLTFDQLALRAPLGQNTVL 145
Query: 494 VQGQRNAREAVRHFGPAPGAPXSHTKXYVRTKGH--EKARXXRRA 622
++G +NAREAV+HFGPAPG P S+TK YVR+KG EKAR R +
Sbjct: 146 LRGPKNAREAVKHFGPAPGVPHSNTKPYVRSKGRKFEKARGRRNS 190
Score = 46.0 bits (104), Expect = 4e-05
Identities = 19/34 (55%), Positives = 26/34 (76%)
Frame = +1
Query: 190 RTNAKFNQXVLRRLFMSRINRPPISVSRLARHMK 291
RT + FN +L+RLFMS+ NRPP+S+ RL R M+
Sbjct: 39 RTKSHFNAVILKRLFMSKTNRPPLSMRRLVRFME 72
>05_01_0401 +
3169979-3169981,3170071-3170160,3170556-3170684,
3170814-3170999,3172001-3172159
Length = 188
Score = 144 bits (348), Expect = 1e-34
Identities = 72/105 (68%), Positives = 83/105 (79%), Gaps = 2/105 (1%)
Frame = +2
Query: 314 IAVVVGTVTNDVRLYKIPKMTVAALHVTEKARARILAAGGEILTFDQLALRAPTGKKTVL 493
IAV+VGTVT+D R+ +IPKM V AL TE ARARI+ AGGE LTFDQLALRAP G+ TVL
Sbjct: 79 IAVIVGTVTDDKRIQEIPKMKVTALRFTETARARIVNAGGECLTFDQLALRAPLGENTVL 138
Query: 494 VQGQRNAREAVRHFGPAPGAPXSHTKXYVRTKGH--EKARXXRRA 622
++G +NAREAVRHFG APG P SHTK YVR+KG EKAR R +
Sbjct: 139 LRGPKNAREAVRHFGKAPGVPHSHTKPYVRSKGRKFEKARGRRNS 183
Score = 46.8 bits (106), Expect = 2e-05
Identities = 19/34 (55%), Positives = 27/34 (79%)
Frame = +1
Query: 190 RTNAKFNQXVLRRLFMSRINRPPISVSRLARHMK 291
RT + FN +L+RLFMS+ NRPP+S+ RLA+ M+
Sbjct: 39 RTKSNFNAVILKRLFMSKTNRPPLSLRRLAKFME 72
>03_02_0954 -
12687373-12687582,12688885-12689067,12689160-12689288,
12689375-12689464,12689548-12689550
Length = 204
Score = 126 bits (303), Expect = 3e-29
Identities = 70/122 (57%), Positives = 84/122 (68%), Gaps = 19/122 (15%)
Frame = +2
Query: 314 IAVVVGTVTNDVRLYKIPKMTVAALHVTEKARARILAAGGEILTFDQLALRAPTGKKT-- 487
IAV+VGTVT+D R+Y++P M VAAL TE ARARI+ GGE LTFDQLALRAP G+ T
Sbjct: 78 IAVIVGTVTDDKRVYEVPAMKVAALRFTETARARIVNTGGECLTFDQLALRAPLGQNTYI 137
Query: 488 ---------------VLVQGQRNAREAVRHFGPAPGAPXSHTKXYVRTKGH--EKARXXR 616
VL++G +NAREAV+HFGPAPG P S+TK YVR+KG EKAR R
Sbjct: 138 AMPEILTIDNFALLQVLLRGPKNAREAVKHFGPAPGVPHSNTKPYVRSKGRKFEKARGRR 197
Query: 617 RA 622
+
Sbjct: 198 NS 199
Score = 47.2 bits (107), Expect = 2e-05
Identities = 20/34 (58%), Positives = 26/34 (76%)
Frame = +1
Query: 190 RTNAKFNQXVLRRLFMSRINRPPISVSRLARHMK 291
RT + FN +LRRLFMS+ NRPP+S+ RL R M+
Sbjct: 39 RTKSPFNAVILRRLFMSKTNRPPLSLRRLVRFME 72
>12_01_0584 -
4762476-4762613,4763986-4764075,4765048-4765146,
4766032-4766154,4766243-4766405,4767307-4767356,
4767826-4767942,4769477-4769683,4769763-4769900,
4771212-4771274,4771358-4771441,4771933-4772084,
4772219-4772357,4772814-4772924
Length = 557
Score = 30.7 bits (66), Expect = 1.5
Identities = 15/38 (39%), Positives = 24/38 (63%), Gaps = 7/38 (18%)
Frame = +1
Query: 241 RINRPPI-----SVSRLARH--MKKPTREWFDCRGSGD 333
R+NR PI + +++ RH +K+P + W DC GSG+
Sbjct: 56 RLNRQPIRNDHMNQNKIIRHGRIKEPPQGWLDCPGSGE 93
>04_03_0468 + 16249716-16249822,16250080-16250233,16250788-16251138
Length = 203
Score = 28.7 bits (61), Expect = 6.2
Identities = 13/29 (44%), Positives = 13/29 (44%)
Frame = +1
Query: 298 TREWFDCRGSGDSHK*RETVQDTEDDGGC 384
TR W G GD E V D E GGC
Sbjct: 143 TRRWLGWCGGGDEEPAMEAVIDRERGGGC 171
>03_06_0500 -
34361139-34362006,34362295-34362818,34362908-34363125,
34363259-34363406
Length = 585
Score = 28.7 bits (61), Expect = 6.2
Identities = 21/80 (26%), Positives = 37/80 (46%), Gaps = 1/80 (1%)
Frame = -3
Query: 598 FMSLGANIGFSVRARCSWSRXKVTHCLTSISLTLYQYCLLASRSTKSQLIKSKNFSSSSQ 419
F+ +G GF++ + +V + S+ + LY + A SQLI + + +S
Sbjct: 455 FLLMGIGDGFALVGLQEYFYDQVPDSMRSLGIGLYLSVIGAGSFLSSQLITAVDRVTSHG 514
Query: 418 NACTSFFG-NMKSSHRHLRY 362
A +FG ++ SS L Y
Sbjct: 515 GAAAGWFGKDLNSSRLDLFY 534
>11_01_0520 +
4078075-4078198,4078726-4078957,4079068-4079147,
4079256-4079409,4079438-4079494,4080733-4080811,
4081013-4081094,4081168-4081223,4081310-4081492
Length = 348
Score = 28.3 bits (60), Expect = 8.3
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = -3
Query: 427 SSQNACTSFFGNMKSSHRHLRYLVQSHVICDCP 329
SS ++ SF + SS+RHL L+ + + CP
Sbjct: 96 SSLDSVRSFAKSFNSSYRHLNVLINNAGVMSCP 128
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,715,179
Number of Sequences: 37544
Number of extensions: 340460
Number of successful extensions: 933
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 905
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 933
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2385713652
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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