Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP12_F_F15
         (855 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL021492-6|CAA16387.1|  188|Caenorhabditis elegans Hypothetical ...   142   3e-34
U40419-9|AAA81429.2| 1715|Caenorhabditis elegans Hypothetical pr...    29   5.6  

>AL021492-6|CAA16387.1|  188|Caenorhabditis elegans Hypothetical
           protein Y45F10D.12 protein.
          Length = 188

 Score =  142 bits (344), Expect = 3e-34
 Identities = 68/101 (67%), Positives = 82/101 (81%), Gaps = 2/101 (1%)
 Frame = +2

Query: 320 VVVGTVTNDVRLYKIPKMTVAALHVTEKARARILAAGGEILTFDQLALRAPTGKKTVLVQ 499
           V + TVT+D RLY +PK++VAALHVTE ARARILAAGGEI+T DQLAL++P G+ TV +Q
Sbjct: 81  VTLSTVTDDARLYTVPKISVAALHVTEGARARILAAGGEIITLDQLALKSPKGENTVFLQ 140

Query: 500 GQRNAREAVRHFGPAPGAPXSHTKXYVRTKGH--EKARXXR 616
           G R+AREA +HFGPAPG P SHTK YVR+KG   E+AR  R
Sbjct: 141 GPRSAREAEKHFGPAPGVPHSHTKPYVRSKGRKFERARGRR 181



 Score = 44.8 bits (101), Expect = 8e-05
 Identities = 22/41 (53%), Positives = 29/41 (70%)
 Frame = +1

Query: 184 AXRTNAKFNQXVLRRLFMSRINRPPISVSRLARHMKKPTRE 306
           A RT  KFN  VL+RL MSR NR P+S+++LAR ++K   E
Sbjct: 36  ARRTGEKFNAIVLKRLRMSRRNRQPLSLAKLARAVQKAGNE 76


>U40419-9|AAA81429.2| 1715|Caenorhabditis elegans Hypothetical protein
            C27F2.8 protein.
          Length = 1715

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = -1

Query: 129  LRCAELAWXVXD*WQRTQLDNQEEKEAKVCKE 34
            ++C  L W     W+R + D+++ K AKV K+
Sbjct: 1158 VKCVHLFWKWSLFWRREKADDKQSKSAKVTKK 1189


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,697,147
Number of Sequences: 27780
Number of extensions: 281886
Number of successful extensions: 786
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 715
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 786
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2129473654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)