Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP12_F_F15
         (855 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    25   0.89 
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    25   0.89 
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          24   1.6  
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    24   2.1  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    23   4.7  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    23   4.7  
AB264332-1|BAF44087.1|   58|Apis mellifera ecdysone-induced prot...    22   6.3  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    22   6.3  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   8.3  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 25.0 bits (52), Expect = 0.89
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = +1

Query: 451 SAGSSCSDWQEDSTGTRSAKCS 516
           SAG+SC    E    TRSA C+
Sbjct: 26  SAGTSCKWLSEGGNDTRSADCT 47


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
            protein.
          Length = 1124

 Score = 25.0 bits (52), Expect = 0.89
 Identities = 13/49 (26%), Positives = 23/49 (46%)
 Frame = +1

Query: 370  DDGGCSSCYRKSSCTHFGCWRRNSYF*SAGSSCSDWQEDSTGTRSAKCS 516
            +DGGCSS    S+  +   +++N Y     SS S +      +  + C+
Sbjct: 924  NDGGCSSLVDVSTPVNKKVYKQNDYIVDESSSSSFYSSFLYKSSESSCN 972


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -1

Query: 369 FGILYSLTSFVTVPTTTA 316
           FG +Y L ++  VPTTTA
Sbjct: 367 FGSIYFLGNYSLVPTTTA 384


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 11/26 (42%), Positives = 13/26 (50%)
 Frame = -1

Query: 369 FGILYSLTSFVTVPTTTAIKPLTSWL 292
           F ILY  T FV V     + P  +WL
Sbjct: 322 FFILYLATPFVPVEPPDILMPALTWL 347


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = -1

Query: 384 AATVIFGILYSLTSFVTVPTTTAIKP 307
           ++ VIFG+L+ L SF+   T T ++P
Sbjct: 14  SSCVIFGVLFVLFSFLR--TRTKLQP 37


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = -1

Query: 384 AATVIFGILYSLTSFVTVPTTTAIKP 307
           ++ VIFG+L+ L SF+   T T ++P
Sbjct: 14  SSCVIFGVLFVLFSFLR--TRTKLQP 37


>AB264332-1|BAF44087.1|   58|Apis mellifera ecdysone-induced
          protein 75 protein.
          Length = 58

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -1

Query: 75 LDNQEEKEAKVCKEG 31
          LDN +E+ A+VC  G
Sbjct: 30 LDNDKEQSAQVCYRG 44


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced
          protein 75 protein.
          Length = 900

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -1

Query: 75 LDNQEEKEAKVCKEG 31
          LDN +E+ A+VC  G
Sbjct: 30 LDNDKEQSAQVCYRG 44


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.8 bits (44), Expect = 8.3
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = -2

Query: 278 AKRDTEIGGRLIRLIKS 228
           AK+ T IGG+ + ++KS
Sbjct: 889 AKKATNIGGKPVAVVKS 905


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 163,267
Number of Sequences: 438
Number of extensions: 3088
Number of successful extensions: 15
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27552579
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)