Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP12_F_F14
         (838 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       28   0.12 
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   2.6  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 27.9 bits (59), Expect = 0.12
 Identities = 14/41 (34%), Positives = 14/41 (34%), Gaps = 2/41 (4%)
 Frame = +3

Query: 648 PPXXXPXXPPXXXXXPPPPPXXXPPPPPXXXPP--PPXXPP 764
           P    P   P     P  P    PP P    PP  PP  PP
Sbjct: 16  PSSGAPGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPP 56



 Score = 25.8 bits (54), Expect = 0.50
 Identities = 11/32 (34%), Positives = 11/32 (34%)
 Frame = +3

Query: 672 PPXXXXXPPPPPXXXPPPPPXXXPPPPXXPPP 767
           P      P P P   P  P    PP P   PP
Sbjct: 16  PSSGAPGPQPSPHQSPQAPQRGSPPNPSQGPP 47



 Score = 24.6 bits (51), Expect = 1.1
 Identities = 13/41 (31%), Positives = 13/41 (31%), Gaps = 2/41 (4%)
 Frame = +3

Query: 651 PXXXPXXPPXXXXXPPPPPXXXPPPPPXXXPPP--PXXPPP 767
           P      P       P  P    PP P   PPP  P   PP
Sbjct: 16  PSSGAPGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPP 56



 Score = 23.0 bits (47), Expect = 3.5
 Identities = 10/32 (31%), Positives = 10/32 (31%)
 Frame = +3

Query: 582 PXPXXXXXXPPXPPPPXXXXXXPPXXXPXXPP 677
           P P      P    PP      PP   P  PP
Sbjct: 25  PSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPP 56



 Score = 23.0 bits (47), Expect = 3.5
 Identities = 9/22 (40%), Positives = 9/22 (40%)
 Frame = +3

Query: 696 PPPPXXXPPPPPXXXPPPPXXP 761
           PP P   PPP      PP   P
Sbjct: 39  PPNPSQGPPPGGPPGAPPSQNP 60



 Score = 21.8 bits (44), Expect = 8.1
 Identities = 11/38 (28%), Positives = 11/38 (28%)
 Frame = +3

Query: 651 PXXXPXXPPXXXXXPPPPPXXXPPPPPXXXPPPPXXPP 764
           P   P   P       PP     PPP      PP   P
Sbjct: 23  PQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPPSQNP 60


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 23.4 bits (48), Expect = 2.6
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = +3

Query: 696 PPPPXXXPPPPPXXXP 743
           PP P   PPPP    P
Sbjct: 338 PPKPAPPPPPPSSSGP 353



 Score = 23.0 bits (47), Expect = 3.5
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = +3

Query: 699 PPPXXXPPPPPXXXPP 746
           PP    PPPPP    P
Sbjct: 338 PPKPAPPPPPPSSSGP 353



 Score = 23.0 bits (47), Expect = 3.5
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = +3

Query: 702 PPXXXPPPPPXXXPPP 749
           PP   PPPPP     P
Sbjct: 338 PPKPAPPPPPPSSSGP 353



 Score = 23.0 bits (47), Expect = 3.5
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = +3

Query: 720 PPPPXXXPPPPXXPPP 767
           PP P   PPPP    P
Sbjct: 338 PPKPAPPPPPPSSSGP 353



 Score = 23.0 bits (47), Expect = 3.5
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = +1

Query: 721 PXXPXXPPPPPXXPPP 768
           P  P  PPPPP    P
Sbjct: 338 PPKPAPPPPPPSSSGP 353



 Score = 22.6 bits (46), Expect = 4.6
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +2

Query: 743 PPPPXXPPPP 772
           PP P  PPPP
Sbjct: 338 PPKPAPPPPP 347



 Score = 22.2 bits (45), Expect = 6.1
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +2

Query: 740 PPPPPXXPPPP 772
           PP P   PPPP
Sbjct: 338 PPKPAPPPPPP 348


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 225,051
Number of Sequences: 438
Number of extensions: 12912
Number of successful extensions: 20
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26824317
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)