Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP12_F_F13
         (858 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1709.17 |||folylpolyglutamate synthase|Schizosaccharomyces p...    88   1e-18
SPAC227.09 |||folylpolyglutamate synthase|Schizosaccharomyces po...    42   1e-04
SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch...    28   2.0  
SPAC1A6.06c |meu31||sequence orphan|Schizosaccharomyces pombe|ch...    26   7.9  

>SPBC1709.17 |||folylpolyglutamate synthase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 505

 Score = 88.2 bits (209), Expect = 1e-18
 Identities = 54/130 (41%), Positives = 76/130 (58%), Gaps = 8/130 (6%)
 Frame = +1

Query: 373 YEDAVRKLNRLQSNKSTIEQIRKDIRTGQKCTNLEDMENYLSRTGVTMSKLDELSVVHVA 552
           +E A+ +LN LQSN   +E +RK  +     + +E M ++L   G   S L+ L+V+HVA
Sbjct: 27  FEGAINRLNSLQSNAKVLEVLRKRGKIPNDQSMVE-MRHWLRCIGYQPSDLNRLNVIHVA 85

Query: 553 GTKGKGSTSAMCESILRH---HGFRT-----GFYSSPHLXAVRXRVRLXXRVISEXMFAX 708
           GTKGKGST A   SIL+     G R+     G Y+SPHL +V  R++L  + IS+ +F  
Sbjct: 86  GTKGKGSTCAFTSSILQQIQKSGERSIPKCIGMYTSPHLRSVCERIQLNGKPISQELFTK 145

Query: 709 YFHXVHXRLE 738
           YF  V  RLE
Sbjct: 146 YFFDVWERLE 155


>SPAC227.09 |||folylpolyglutamate synthase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 417

 Score = 41.9 bits (94), Expect = 1e-04
 Identities = 19/59 (32%), Positives = 30/59 (50%)
 Frame = +1

Query: 526 DELSVVHVAGTKGKGSTSAMCESILRHHGFRTGFYSSPHLXAVRXRVRLXXRVISEXMF 702
           +    V +AGT GKGS  +   + L     +TG Y+SPH    R  + +  ++ SE +F
Sbjct: 22  ESFCAVQIAGTNGKGSICSYIYTSLLQAAIKTGRYTSPHFLEPRDTISINGQIASEEIF 80


>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 750

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 15/43 (34%), Positives = 27/43 (62%), Gaps = 2/43 (4%)
 Frame = +1

Query: 373 YEDAVRKLNRLQSNKSTIEQIRKD--IRTGQKCTNLEDMENYL 495
           +ED + KLN   SN++++   +KD   ++ Q+C+ LE+  N L
Sbjct: 128 FEDQIEKLNSEISNQNSLILQKKDELEKSIQRCSELEEKINSL 170


>SPAC1A6.06c |meu31||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 185

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 14/52 (26%), Positives = 28/52 (53%)
 Frame = -2

Query: 347 LLSK*LRHRPMLFISLSNTYYFARLASSXSVHXTX*LCN*LIVAKNSTTIRP 192
           +L + L  R ++  SL+   +F  + ++ +V+    LC  L++  N  +IRP
Sbjct: 103 MLCEILNARNVISCSLNTQKFFFIIVAASNVYSIFQLCGCLLMFNNIISIRP 154


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,518,942
Number of Sequences: 5004
Number of extensions: 45749
Number of successful extensions: 121
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 426466470
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)