Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP12_F_F13
         (858 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_1171 - 26669487-26669854,26670769-26670868,26670970-266711...    58   7e-09
10_08_0548 - 18685114-18685230,18685615-18685724,18685779-186858...    31   0.89 
08_01_0469 - 4127950-4127988,4127989-4128264,4128845-4130861,413...    31   1.6  
07_03_0154 + 14509979-14512033                                         30   2.7  
10_03_0034 + 7257033-7257045,7257074-7257104,7257880-7258009,725...    29   4.7  
08_02_0923 - 22649420-22649605,22649694-22649774,22649867-226501...    29   4.7  

>12_02_1171 -
           26669487-26669854,26670769-26670868,26670970-26671161,
           26672475-26672537,26673197-26673347,26673614-26673711,
           26673936-26674136
          Length = 390

 Score = 58.4 bits (135), Expect = 7e-09
 Identities = 23/42 (54%), Positives = 31/42 (73%)
 Frame = +1

Query: 541 VHVAGTKGKGSTSAMCESILRHHGFRTGFYSSPHLXAVRXRV 666
           VH+AGTKGKGST+A   +I+R  G+  G Y+SPHL  +R R+
Sbjct: 69  VHIAGTKGKGSTAAFLSNIMREQGYNVGCYTSPHLLTIRERI 110


>10_08_0548 -
           18685114-18685230,18685615-18685724,18685779-18685802,
           18686135-18686213,18686346-18686588,18686659-18686823,
           18686960-18687037,18687185-18687231,18687319-18687379,
           18687667-18687723,18688164-18688247,18689292-18689357,
           18689447-18689574,18689693-18689885
          Length = 483

 Score = 31.5 bits (68), Expect = 0.89
 Identities = 20/50 (40%), Positives = 26/50 (52%)
 Frame = +1

Query: 427 EQIRKDIRTGQKCTNLEDMENYLSRTGVTMSKLDELSVVHVAGTKGKGST 576
           +++R D  TG +    E M  YL    +    +  L VVHVAGTKGK  T
Sbjct: 86  QKVRAD--TGNRGNQWELMAKYLQILELE-EPIARLKVVHVAGTKGKDKT 132


>08_01_0469 -
           4127950-4127988,4127989-4128264,4128845-4130861,
           4131134-4131987
          Length = 1061

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
 Frame = +1

Query: 514 MSKLDELSVVHVAGTK--GKGSTSAMCESILRHHGFRT 621
           + KL EL V+H    K  G+G TSA+ ES+   H  +T
Sbjct: 700 LGKLRELRVLHAKNLKLDGQGETSALLESLCNLHKIQT 737


>07_03_0154 + 14509979-14512033
          Length = 684

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = +3

Query: 423 NRTNQKGYQNRTEMYKFRRYGELFVKNRCDHVKVGRAIC 539
           NR +QKG +NR E+++ R  G  +     D +K G  IC
Sbjct: 521 NRVSQKGLRNRLEVFRSRETG--WGVRSLDLIKAGTFIC 557


>10_03_0034 +
           7257033-7257045,7257074-7257104,7257880-7258009,
           7258423-7258751,7259923-7260026,7260138-7260476,
           7261074-7261199,7261366-7261489,7261615-7261723,
           7262171-7262251
          Length = 461

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 18/52 (34%), Positives = 23/52 (44%)
 Frame = +1

Query: 415 KSTIEQIRKDIRTGQKCTNLEDMENYLSRTGVTMSKLDELSVVHVAGTKGKG 570
           K   +Q+R DI      + LED E Y     V  S  DE    ++   KGKG
Sbjct: 53  KGLQDQVRSDIMNSSYLS-LEDQEEYKMMGNVVFSSEDEGYKFYLGYAKGKG 103


>08_02_0923 -
           22649420-22649605,22649694-22649774,22649867-22650146,
           22650412-22650716,22650809-22650961,22651425-22652261
          Length = 613

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 15/44 (34%), Positives = 27/44 (61%)
 Frame = +1

Query: 406 QSNKSTIEQIRKDIRTGQKCTNLEDMENYLSRTGVTMSKLDELS 537
           Q +K T+E++++ I+ G+K  N    +NY   T  ++SK  +LS
Sbjct: 493 QHHKPTVEELKEIIQEGKK--NAIKFQNYFESTIQSLSKQHDLS 534


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,894,529
Number of Sequences: 37544
Number of extensions: 301424
Number of successful extensions: 691
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 672
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 691
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2397465936
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)