Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP12_F_F12
         (910 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC613.06 |rpl902|rpl9-2|60S ribosomal protein L9|Schizosacchar...   200   3e-52
SPAC4G9.16c |rpl901|rpl9-1|60S ribosomal protein L9|Schizosaccha...   196   3e-51
SPAC323.05c |||S-adenosylmethionine-dependent methyltransferase ...    27   2.8  
SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit Smc6|Schizosac...    27   3.7  
SPAC17H9.04c |||RNA-binding protein|Schizosaccharomyces pombe|ch...    27   3.7  
SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|c...    27   4.9  

>SPCC613.06 |rpl902|rpl9-2|60S ribosomal protein
           L9|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 189

 Score =  200 bits (487), Expect = 3e-52
 Identities = 98/182 (53%), Positives = 130/182 (71%)
 Frame = +3

Query: 102 IVANQXVKIPXGLTVHVKSRLVXVKGPRGVLKRNFKHLAVDIRMVNPRLLKVEKWFGSKK 281
           I  ++ + IP G++V +K+RLV VKGPRGVLK+N + + ++++      +K   W GS+K
Sbjct: 5   IYKDETLTIPEGVSVDIKARLVTVKGPRGVLKQNLRRVDIELKKQG-NTIKFIVWHGSRK 63

Query: 282 ELAAVRTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRR 461
             A +RT  S + NMI GVT+GF+YKMR VYAHFPIN   TE  +++EIRNFLGE+  R 
Sbjct: 64  HNACIRTAYSIINNMIIGVTQGFRYKMRLVYAHFPININLTENGTVVEIRNFLGERITRV 123

Query: 462 VKMAPGVTVVNSPKQKDELIIEGNSLEDVSSSAALIQQSTTVKNKDIRKFLDGLYVSXKT 641
           +K  PGVTV  S   KDE+IIEGNSLE+VS SAA I+Q   V+NKDIRKFLDG+YVS + 
Sbjct: 124 IKCLPGVTVSISSAVKDEIIIEGNSLENVSQSAANIKQICNVRNKDIRKFLDGIYVSERG 183

Query: 642 TV 647
            +
Sbjct: 184 NI 185


>SPAC4G9.16c |rpl901|rpl9-1|60S ribosomal protein
           L9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 190

 Score =  196 bits (479), Expect = 3e-51
 Identities = 96/182 (52%), Positives = 129/182 (70%)
 Frame = +3

Query: 102 IVANQXVKIPXGLTVHVKSRLVXVKGPRGVLKRNFKHLAVDIRMVNPRLLKVEKWFGSKK 281
           I  ++ + IP G+TV +K+R V V GPRG LK+N +H+ ++++      +K   W GS+K
Sbjct: 5   IYKDETLTIPKGVTVDIKARNVTVTGPRGTLKQNLRHVDIEMKKQG-NTIKFIVWHGSRK 63

Query: 282 ELAAVRTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRR 461
             A +R+V S + NMI GVT+GF+YKMR VYAHFPIN   TE  +++EIRNFLGE+  R 
Sbjct: 64  HNACIRSVYSIINNMIIGVTQGFRYKMRLVYAHFPININLTENGTVVEIRNFLGERITRV 123

Query: 462 VKMAPGVTVVNSPKQKDELIIEGNSLEDVSSSAALIQQSTTVKNKDIRKFLDGLYVSXKT 641
           +K  PGVTV  S   KDE+I+EGNSLE+VS SAA I+Q   V+NKDIRKFLDG+YVS + 
Sbjct: 124 IKCLPGVTVSISSAVKDEIILEGNSLENVSQSAANIKQICNVRNKDIRKFLDGIYVSERG 183

Query: 642 TV 647
            +
Sbjct: 184 NI 185


>SPAC323.05c |||S-adenosylmethionine-dependent methyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 231

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 10/36 (27%), Positives = 24/36 (66%)
 Frame = +3

Query: 537 LEDVSSSAALIQQSTTVKNKDIRKFLDGLYVSXKTT 644
           + D+S+SA    + T + N+++ K  +GL+++ +T+
Sbjct: 78  MSDISNSACRASKITALNNRELYKDDNGLFITVQTS 113


>SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit
           Smc6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1140

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 11/29 (37%), Positives = 21/29 (72%)
 Frame = +3

Query: 492 NSPKQKDELIIEGNSLEDVSSSAALIQQS 578
           +SPK+K +L ++G  L+ +  + +LI+QS
Sbjct: 249 SSPKEKYQLFMKGIQLKQLEENYSLIEQS 277


>SPAC17H9.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 604

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 13/49 (26%), Positives = 22/49 (44%)
 Frame = -3

Query: 305 DCPHGGKLLFGSEPFLNLQETRVYHANVNSQVFEVPFENSAGPFNXHQT 159
           D P+G     GS  F+      V+H+N N+   ++  +N     N H +
Sbjct: 386 DFPYGNSYGNGSSHFIANYGGSVHHSNENTMQSDLQHQNGNNAVNHHHS 434


>SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1717

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = +3

Query: 204  FKHLAVDIRMVNPRLLKVEKWFGSKKELAAVRTVCSHVENMIKGVT 341
            F H +VD+ +    L + E WF        + T+CS + N++  VT
Sbjct: 1594 FTHGSVDMLIEQNNLKQSEIWFVLNDFSLVLATICSCLGNLLNLVT 1639


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,549,657
Number of Sequences: 5004
Number of extensions: 49286
Number of successful extensions: 146
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 460503700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)