Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP12_F_F11
         (1065 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    31   0.28 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   3.4  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    26   7.8  

>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 31.1 bits (67), Expect = 0.28
 Identities = 19/57 (33%), Positives = 20/57 (35%), Gaps = 3/57 (5%)
 Frame = +1

Query: 766  PPXPXXXXXGSXXPAPRTHXXPXPXAXT--PXPXPTXXXXXPHTXRRAP-XPXPXPA 927
            PP P         P P     P P   T  P P PT     P +   AP  P P PA
Sbjct: 1012 PPVPKLSSKAPPVPLPSADAPPIPVPSTAPPVPIPTSTPPVPKSSSGAPSAPPPVPA 1068


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 27.5 bits (58), Expect = 3.4
 Identities = 23/74 (31%), Positives = 25/74 (33%), Gaps = 3/74 (4%)
 Frame = +3

Query: 690 PPAXPPNXRXARHXXPPRGTXRVAXSXXPRXXRXRFPAXRTSDTPXPASSXXNPPP---X 860
           PP  PP  R  R   PP G      S  P     R  A  +   P    S   PPP    
Sbjct: 311 PPPPPPPSRRNR-GKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSA 369

Query: 861 PHXXXXXPPHPASR 902
           P      PP  +SR
Sbjct: 370 PSTGRQPPPLSSSR 383


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 26.2 bits (55), Expect = 7.8
 Identities = 16/53 (30%), Positives = 17/53 (32%)
 Frame = +1

Query: 766 PPXPXXXXXGSXXPAPRTHXXPXPXAXTPXPXPTXXXXXPHTXRRAPXPXPXP 924
           PP P      +  PAP     P P    P P P      P      P P P P
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPP----PPPGVAGAGPPPPPPP 781


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,865,137
Number of Sequences: 5004
Number of extensions: 19588
Number of successful extensions: 59
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 51
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 561209266
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)