Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP12_F_F11
(1065 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 36 0.065
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 36 0.065
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 36 0.065
AC006627-3|AAK85461.1| 504|Caenorhabditis elegans Hypothetical ... 36 0.065
U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical pr... 32 0.60
U58751-5|AAN84882.1| 781|Caenorhabditis elegans Wasp (actin cyt... 31 1.8
U58751-4|AAN84881.1| 607|Caenorhabditis elegans Wasp (actin cyt... 31 1.8
U41543-12|AAZ91345.1| 401|Caenorhabditis elegans Groundhog (hed... 29 7.4
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 35.5 bits (78), Expect = 0.065
Identities = 18/63 (28%), Positives = 19/63 (30%)
Frame = +1
Query: 730 PXPPXGXXXXXXPPXPXXXXXGSXXPAPRTHXXPXPXAXTPXPXPTXXXXXPHTXRRAPX 909
P PP G P P PRT P P +P P P P P
Sbjct: 240 PPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPP 299
Query: 910 PXP 918
P P
Sbjct: 300 PPP 302
Score = 34.3 bits (75), Expect = 0.15
Identities = 19/61 (31%), Positives = 20/61 (32%), Gaps = 2/61 (3%)
Frame = +1
Query: 736 PPXGXXXXXXPP--XPXXXXXGSXXPAPRTHXXPXPXAXTPXPXPTXXXXXPHTXRRAPX 909
PP G PP P GS P P P P +P P PT P P
Sbjct: 232 PPAGSPPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPP 291
Query: 910 P 912
P
Sbjct: 292 P 292
Score = 31.9 bits (69), Expect = 0.80
Identities = 21/70 (30%), Positives = 26/70 (37%), Gaps = 2/70 (2%)
Frame = +3
Query: 735 PPRGTXRVAXSXXPRXXRXRF--PAXRTSDTPXPASSXXNPPPXPHXXXXXPPHPASRTX 908
PP+G+ +A S P P RT P P + +PPP P PP S
Sbjct: 242 PPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTG--SPPPPPAGGSPPPPRAGSPPP 299
Query: 909 PXTRSXGTPT 938
P PT
Sbjct: 300 PPPPRGSPPT 309
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 35.5 bits (78), Expect = 0.065
Identities = 18/63 (28%), Positives = 19/63 (30%)
Frame = +1
Query: 730 PXPPXGXXXXXXPPXPXXXXXGSXXPAPRTHXXPXPXAXTPXPXPTXXXXXPHTXRRAPX 909
P PP G P P PRT P P +P P P P P
Sbjct: 261 PPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPP 320
Query: 910 PXP 918
P P
Sbjct: 321 PPP 323
Score = 34.3 bits (75), Expect = 0.15
Identities = 19/61 (31%), Positives = 20/61 (32%), Gaps = 2/61 (3%)
Frame = +1
Query: 736 PPXGXXXXXXPP--XPXXXXXGSXXPAPRTHXXPXPXAXTPXPXPTXXXXXPHTXRRAPX 909
PP G PP P GS P P P P +P P PT P P
Sbjct: 253 PPAGSPPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPP 312
Query: 910 P 912
P
Sbjct: 313 P 313
Score = 31.9 bits (69), Expect = 0.80
Identities = 21/70 (30%), Positives = 26/70 (37%), Gaps = 2/70 (2%)
Frame = +3
Query: 735 PPRGTXRVAXSXXPRXXRXRF--PAXRTSDTPXPASSXXNPPPXPHXXXXXPPHPASRTX 908
PP+G+ +A S P P RT P P + +PPP P PP S
Sbjct: 263 PPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTG--SPPPPPAGGSPPPPRAGSPPP 320
Query: 909 PXTRSXGTPT 938
P PT
Sbjct: 321 PPPPRGSPPT 330
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 35.5 bits (78), Expect = 0.065
Identities = 18/63 (28%), Positives = 19/63 (30%)
Frame = +1
Query: 730 PXPPXGXXXXXXPPXPXXXXXGSXXPAPRTHXXPXPXAXTPXPXPTXXXXXPHTXRRAPX 909
P PP G P P PRT P P +P P P P P
Sbjct: 246 PPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPP 305
Query: 910 PXP 918
P P
Sbjct: 306 PPP 308
Score = 34.3 bits (75), Expect = 0.15
Identities = 19/61 (31%), Positives = 20/61 (32%), Gaps = 2/61 (3%)
Frame = +1
Query: 736 PPXGXXXXXXPP--XPXXXXXGSXXPAPRTHXXPXPXAXTPXPXPTXXXXXPHTXRRAPX 909
PP G PP P GS P P P P +P P PT P P
Sbjct: 238 PPAGSPPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPP 297
Query: 910 P 912
P
Sbjct: 298 P 298
Score = 31.9 bits (69), Expect = 0.80
Identities = 21/70 (30%), Positives = 26/70 (37%), Gaps = 2/70 (2%)
Frame = +3
Query: 735 PPRGTXRVAXSXXPRXXRXRF--PAXRTSDTPXPASSXXNPPPXPHXXXXXPPHPASRTX 908
PP+G+ +A S P P RT P P + +PPP P PP S
Sbjct: 248 PPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTG--SPPPPPAGGSPPPPRAGSPPP 305
Query: 909 PXTRSXGTPT 938
P PT
Sbjct: 306 PPPPRGSPPT 315
>AC006627-3|AAK85461.1| 504|Caenorhabditis elegans Hypothetical
protein E01A2.4 protein.
Length = 504
Score = 35.5 bits (78), Expect = 0.065
Identities = 28/89 (31%), Positives = 31/89 (34%), Gaps = 5/89 (5%)
Frame = +3
Query: 690 PPAXPPNXRX-----ARHXXPPRGTXRVAXSXXPRXXRXRFPAXRTSDTPXPASSXXNPP 854
P A PP R R PPR T R + S R R P R+ P S P
Sbjct: 87 PSASPPRRRRDDSPRKRSRSPPRRTRR-SPSPPRRRRISRSPVRRSRSPPRRQVSRSRSP 145
Query: 855 PXPHXXXXXPPHPASRTXPXTRSXGTPTR 941
P P PA R +RS P R
Sbjct: 146 PPRRQQRSRSPPPAKRRRDQSRSKSPPRR 174
>U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical
protein R04E5.8a protein.
Length = 997
Score = 32.3 bits (70), Expect = 0.60
Identities = 22/78 (28%), Positives = 24/78 (30%)
Frame = +3
Query: 690 PPAXPPNXRXARHXXPPRGTXRVAXSXXPRXXRXRFPAXRTSDTPXPASSXXNPPPXPHX 869
PP P R PP RV + PR R P T +P P P P
Sbjct: 124 PPPPPRKSRAGGSSPPPPPPPRVPRTPPPRSPPPRRP-PMTPPSPQRRPPRTPPSPEPRN 182
Query: 870 XXXXPPHPASRTXPXTRS 923
PP P P S
Sbjct: 183 PPRTPPSPIPPPPPRLNS 200
>U58751-5|AAN84882.1| 781|Caenorhabditis elegans Wasp (actin
cytoskeleton modulator)homolog protein 1, isoform b
protein.
Length = 781
Score = 30.7 bits (66), Expect = 1.8
Identities = 18/65 (27%), Positives = 19/65 (29%)
Frame = +1
Query: 730 PXPPXGXXXXXXPPXPXXXXXGSXXPAPRTHXXPXPXAXTPXPXPTXXXXXPHTXRRAPX 909
P PP P P P R H P P P P P P + P
Sbjct: 576 PPPPSSGTRGIAPSRPLPQAPNYGTPENRPHAVPPP---PPPPPPQSFGMAPISSAAPPP 632
Query: 910 PXPXP 924
P P P
Sbjct: 633 PPPPP 637
>U58751-4|AAN84881.1| 607|Caenorhabditis elegans Wasp (actin
cytoskeleton modulator)homolog protein 1, isoform a
protein.
Length = 607
Score = 30.7 bits (66), Expect = 1.8
Identities = 18/65 (27%), Positives = 19/65 (29%)
Frame = +1
Query: 730 PXPPXGXXXXXXPPXPXXXXXGSXXPAPRTHXXPXPXAXTPXPXPTXXXXXPHTXRRAPX 909
P PP P P P R H P P P P P P + P
Sbjct: 402 PPPPSSGTRGIAPSRPLPQAPNYGTPENRPHAVPPP---PPPPPPQSFGMAPISSAAPPP 458
Query: 910 PXPXP 924
P P P
Sbjct: 459 PPPPP 463
>U41543-12|AAZ91345.1| 401|Caenorhabditis elegans Groundhog
(hedgehog-like family)protein 7 protein.
Length = 401
Score = 28.7 bits (61), Expect = 7.4
Identities = 16/53 (30%), Positives = 16/53 (30%)
Frame = +1
Query: 766 PPXPXXXXXGSXXPAPRTHXXPXPXAXTPXPXPTXXXXXPHTXRRAPXPXPXP 924
PP P PAP P P P P P P P P P P
Sbjct: 50 PPPPPAPYPQQAVPAPAPPPAPYPQHAVPAPAP-PLASYPQNAVPVPAPPPAP 101
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,584,200
Number of Sequences: 27780
Number of extensions: 167579
Number of successful extensions: 648
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 332
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 549
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2845728736
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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