Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP12_F_F07
         (859 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92790-5|CAI79208.1|  169|Caenorhabditis elegans Hypothetical pr...    28   7.4  
U61947-14|ABA29341.1|  413|Caenorhabditis elegans Nuclear hormon...    28   9.8  
U61947-13|AAB03131.3|  429|Caenorhabditis elegans Nuclear hormon...    28   9.8  
AY204189-1|AAO39193.1|  429|Caenorhabditis elegans nuclear recep...    28   9.8  

>Z92790-5|CAI79208.1|  169|Caenorhabditis elegans Hypothetical
           protein H03G16.6 protein.
          Length = 169

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -3

Query: 311 LCCNRLYRIVHRRSVPKCRRPSLLPXSXPT 222
           LC N  Y++      PK R+ +L+P S PT
Sbjct: 86  LCTNMSYQLQKMVVFPKVRKEALMPTSSPT 115


>U61947-14|ABA29341.1|  413|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 105, isoform b protein.
          Length = 413

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 4/41 (9%)
 Frame = -3

Query: 365 PWCRKPGRLADRGHH---*KSLCCNRLY-RIVHRRSVPKCR 255
           P C   GR+A+ GHH      L C   + R+V +++ PKC+
Sbjct: 36  PCCLVCGRVANTGHHYGVTACLGCKTFFRRVVLQKNSPKCK 76


>U61947-13|AAB03131.3|  429|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 105, isoform a protein.
          Length = 429

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 4/41 (9%)
 Frame = -3

Query: 365 PWCRKPGRLADRGHH---*KSLCCNRLY-RIVHRRSVPKCR 255
           P C   GR+A+ GHH      L C   + R+V +++ PKC+
Sbjct: 36  PCCLVCGRVANTGHHYGVTACLGCKTFFRRVVLQKNSPKCK 76


>AY204189-1|AAO39193.1|  429|Caenorhabditis elegans nuclear receptor
           NHR-105 protein.
          Length = 429

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 4/41 (9%)
 Frame = -3

Query: 365 PWCRKPGRLADRGHH---*KSLCCNRLY-RIVHRRSVPKCR 255
           P C   GR+A+ GHH      L C   + R+V +++ PKC+
Sbjct: 36  PCCLVCGRVANTGHHYGVTACLGCKTFFRRVVLQKNSPKCK 76


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,144,000
Number of Sequences: 27780
Number of extensions: 239697
Number of successful extensions: 485
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 481
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 485
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2139963672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)