Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP12_F_F06
         (899 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q02543 Cluster: 60S ribosomal protein L18a; n=120; Fung...    65   3e-09
UniRef50_Q0IFJ6 Cluster: Putative uncharacterized protein; n=5; ...    52   3e-05
UniRef50_Q54MK8 Cluster: Ribosomal protein L18a; n=2; Eukaryota|...    46   0.001
UniRef50_Q4N436 Cluster: 60S ribosomal protein L18, putative; n=...    42   0.016
UniRef50_P51418 Cluster: 60S ribosomal protein L18a-2; n=24; Vir...    41   0.037
UniRef50_Q5CNE7 Cluster: 60S ribosomal protein L18a; n=2; Crypto...    38   0.26 
UniRef50_Q4PBN4 Cluster: Putative uncharacterized protein; n=1; ...    38   0.26 
UniRef50_A0LUL4 Cluster: Secreted protein precursor; n=1; Acidot...    34   4.3  
UniRef50_P05732 Cluster: 60S ribosomal protein L20; n=6; Dikarya...    34   4.3  
UniRef50_Q4PCW3 Cluster: Putative uncharacterized protein; n=1; ...    34   5.7  
UniRef50_Q015Y8 Cluster: Putative ribosomal protein L18a; n=1; O...    33   7.5  

>UniRef50_Q02543 Cluster: 60S ribosomal protein L18a; n=120;
           Fungi/Metazoa group|Rep: 60S ribosomal protein L18a -
           Homo sapiens (Human)
          Length = 176

 Score = 64.9 bits (151), Expect = 3e-09
 Identities = 30/52 (57%), Positives = 37/52 (71%)
 Frame = +3

Query: 75  QIIKVEVIKAAACRRPQVKQFHNSTIRFPLPKRVHHYKRLNTFAYKRPSTYF 230
           QI+KVE I A+ CRRP VKQFH+S I+FPLP RV   +    F  KRP+T+F
Sbjct: 125 QIMKVEEIAASKCRRPAVKQFHDSKIKFPLPHRVLRRQHKPRFTTKRPNTFF 176


>UniRef50_Q0IFJ6 Cluster: Putative uncharacterized protein; n=5;
           Aedes aegypti|Rep: Putative uncharacterized protein -
           Aedes aegypti (Yellowfever mosquito)
          Length = 153

 Score = 51.6 bits (118), Expect = 3e-05
 Identities = 23/51 (45%), Positives = 34/51 (66%)
 Frame = +3

Query: 75  QIIKVEVIKAAACRRPQVKQFHNSTIRFPLPKRVHHYKRLNTFAYKRPSTY 227
           +IIKVE +K +  RR  +KQF++S IRF L +R HH +    F++ +P TY
Sbjct: 103 KIIKVESVKTSKTRRVHIKQFYDSKIRFLLVQRYHHKRYRKLFSFCQPDTY 153


>UniRef50_Q54MK8 Cluster: Ribosomal protein L18a; n=2;
           Eukaryota|Rep: Ribosomal protein L18a - Dictyostelium
           discoideum AX4
          Length = 191

 Score = 46.4 bits (105), Expect = 0.001
 Identities = 23/51 (45%), Positives = 32/51 (62%)
 Frame = +3

Query: 78  IIKVEVIKAAACRRPQVKQFHNSTIRFPLPKRVHHYKRLNTFAYKRPSTYF 230
           II ++ I A+  RR   KQFH+S I+FPL  R+   K  +TF   RP+T+F
Sbjct: 142 IIDIKEIAASLTRRANTKQFHDSKIKFPLTHRI--AKSKSTFVANRPNTFF 190


>UniRef50_Q4N436 Cluster: 60S ribosomal protein L18, putative; n=9;
           Aconoidasida|Rep: 60S ribosomal protein L18, putative -
           Theileria parva
          Length = 191

 Score = 42.3 bits (95), Expect = 0.016
 Identities = 20/51 (39%), Positives = 32/51 (62%), Gaps = 2/51 (3%)
 Frame = +3

Query: 75  QIIKVEVIKAAACRRPQVKQFHNSTIRFPLPKRVHHYKRLN--TFAYKRPS 221
           QII+V  I  + C++P+V Q H   ++FP+ K + H +R +   F+ KRPS
Sbjct: 138 QIIRVAEISDSDCKKPKVTQMHGKKLKFPILKPMPHVERKDRKLFSTKRPS 188


>UniRef50_P51418 Cluster: 60S ribosomal protein L18a-2; n=24;
           Viridiplantae|Rep: 60S ribosomal protein L18a-2 -
           Arabidopsis thaliana (Mouse-ear cress)
          Length = 178

 Score = 41.1 bits (92), Expect = 0.037
 Identities = 17/30 (56%), Positives = 20/30 (66%)
 Frame = +3

Query: 75  QIIKVEVIKAAACRRPQVKQFHNSTIRFPL 164
           QIIK   + A  C+R   KQFHNS I+FPL
Sbjct: 124 QIIKTATVPAKLCKRESTKQFHNSKIKFPL 153


>UniRef50_Q5CNE7 Cluster: 60S ribosomal protein L18a; n=2;
           Cryptosporidium|Rep: 60S ribosomal protein L18a -
           Cryptosporidium hominis
          Length = 185

 Score = 38.3 bits (85), Expect = 0.26
 Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 2/53 (3%)
 Frame = +3

Query: 75  QIIKVEVIKAAACRRPQVKQFHNSTIRFPLPKRVHHYKRL--NTFAYKRPSTY 227
           QII+V  I A   +RP+  QF NS ++FP  +++    +   +TF   RP+T+
Sbjct: 131 QIIRVSQIDAKLAKRPKTTQFFNSKLKFPAIRKLPMAPKALRSTFTASRPTTF 183


>UniRef50_Q4PBN4 Cluster: Putative uncharacterized protein; n=1;
           Ustilago maydis|Rep: Putative uncharacterized protein -
           Ustilago maydis (Smut fungus)
          Length = 532

 Score = 38.3 bits (85), Expect = 0.26
 Identities = 19/52 (36%), Positives = 33/52 (63%), Gaps = 1/52 (1%)
 Frame = +3

Query: 78  IIKV-EVIKAAACRRPQVKQFHNSTIRFPLPKRVHHYKRLNTFAYKRPSTYF 230
           I+K+ E+ K+   +RP +KQ     ++FPLP R    + + TFA +RP+T++
Sbjct: 483 ILKIAEIEKSEDVKRPYIKQLMAPGLKFPLPHR--RPRHVGTFAGQRPNTFY 532


>UniRef50_A0LUL4 Cluster: Secreted protein precursor; n=1;
           Acidothermus cellulolyticus 11B|Rep: Secreted protein
           precursor - Acidothermus cellulolyticus (strain ATCC
           43068 / 11B)
          Length = 201

 Score = 34.3 bits (75), Expect = 4.3
 Identities = 18/48 (37%), Positives = 26/48 (54%)
 Frame = +3

Query: 87  VEVIKAAACRRPQVKQFHNSTIRFPLPKRVHHYKRLNTFAYKRPSTYF 230
           +E ++AAA + P  ++FHN  +R  L  R H   RL   A +RP   F
Sbjct: 120 IEELEAAATKIPLARRFHNDAVRATLAVRRHRLVRLLRLA-RRPEPAF 166


>UniRef50_P05732 Cluster: 60S ribosomal protein L20; n=6;
           Dikarya|Rep: 60S ribosomal protein L20 -
           Schizosaccharomyces pombe (Fission yeast)
          Length = 176

 Score = 34.3 bits (75), Expect = 4.3
 Identities = 24/56 (42%), Positives = 30/56 (53%), Gaps = 4/56 (7%)
 Frame = +3

Query: 75  QIIKV-EVIKAAACRRPQVKQFHNSTIRFPLPKR---VHHYKRLNTFAYKRPSTYF 230
           +I+KV EV K    RR  VKQ  N  ++FPLP R   V        FA  RPST++
Sbjct: 121 RILKVVEVEKKEDVRRNYVKQLLNPHLKFPLPHRRTGVVGLAGKKVFAPHRPSTFY 176


>UniRef50_Q4PCW3 Cluster: Putative uncharacterized protein; n=1;
           Ustilago maydis|Rep: Putative uncharacterized protein -
           Ustilago maydis (Smut fungus)
          Length = 3743

 Score = 33.9 bits (74), Expect = 5.7
 Identities = 16/41 (39%), Positives = 24/41 (58%)
 Frame = +1

Query: 127 SNSSTTAPSDSHCPNVCTTTRDLIPSRTRGLALTSCNCNVR 249
           S+S+    S S C +V T T D +PSR  G+++T  N  +R
Sbjct: 638 SSSNALLASVSDCSDVFTPTHDSLPSRELGVSVTGLNLELR 678


>UniRef50_Q015Y8 Cluster: Putative ribosomal protein L18a; n=1;
           Ostreococcus tauri|Rep: Putative ribosomal protein L18a
           - Ostreococcus tauri
          Length = 254

 Score = 33.5 bits (73), Expect = 7.5
 Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
 Frame = +3

Query: 66  TQXQIIKVEVIKAAACRRPQVKQFHNSTIRFPLPKRV--HHYKRLNT-FAYKRPS 221
           +Q QIIK+  +     RR   +QF    + FP+  +V  H  K   T F YKRP+
Sbjct: 196 SQLQIIKIAEVSDENVRRENTRQFLAEDLSFPVVNKVMRHPSKATKTIFKYKRPN 250


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 312,583,961
Number of Sequences: 1657284
Number of extensions: 4986846
Number of successful extensions: 13404
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 13108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13400
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 81571813589
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)