Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP12_F_F06
         (899 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_07_0131 + 27898028-27898042,27898159-27898274,27898361-278984...    40   0.002
01_06_0180 - 27260099-27260440,27261236-27261350,27261403-272615...    39   0.005
01_06_0730 - 31552747-31553088,31553583-31553646,31553743-315538...    38   0.014
12_01_0752 - 6798938-6799312,6799628-6799768,6800257-6800325,680...    33   0.41 
11_05_0015 + 18403367-18403729,18404500-18404565,18405121-184052...    32   0.54 

>05_07_0131 +
           27898028-27898042,27898159-27898274,27898361-27898424,
           27899450-27899791
          Length = 178

 Score = 40.3 bits (90), Expect = 0.002
 Identities = 22/54 (40%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
 Frame = +3

Query: 75  QIIKVEVIKAAACRRPQVKQFHNSTIRFPL---PKRVHHYKRLNTFAYKRPSTY 227
           QIIK   +    C+R   KQFHNS I+FPL     R    K   TF   RP+ +
Sbjct: 124 QIIKTATVHFKLCKRDNTKQFHNSNIKFPLVYRKVRPPTRKLKTTFKASRPNLF 177


>01_06_0180 -
           27260099-27260440,27261236-27261350,27261403-27261518,
           27261594-27261608
          Length = 195

 Score = 39.1 bits (87), Expect = 0.005
 Identities = 21/54 (38%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
 Frame = +3

Query: 75  QIIKVEVIKAAACRRPQVKQFHNSTIRFPL---PKRVHHYKRLNTFAYKRPSTY 227
           QIIK   +    C+R   KQFHN +I+FPL     R    K   TF   RP+ +
Sbjct: 141 QIIKTATVHFKLCKRDNTKQFHNGSIKFPLVYRKVRPPTRKLKTTFKASRPNLF 194


>01_06_0730 -
           31552747-31553088,31553583-31553646,31553743-31553858,
           31553964-31553978
          Length = 178

 Score = 37.5 bits (83), Expect = 0.014
 Identities = 21/54 (38%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
 Frame = +3

Query: 75  QIIKVEVIKAAACRRPQVKQFHNSTIRFPL---PKRVHHYKRLNTFAYKRPSTY 227
           QIIK   +    C+R   KQFH S I+FPL     R    K   TF   RP+ +
Sbjct: 124 QIIKTATVHFKLCKRDNTKQFHKSDIKFPLVYRKVRPPTRKLKTTFKASRPNLF 177


>12_01_0752 -
           6798938-6799312,6799628-6799768,6800257-6800325,
           6800407-6800454,6801740-6801836,6801922-6802001,
           6802099-6802170,6802335-6802429,6802853-6802934,
           6805476-6805853
          Length = 478

 Score = 32.7 bits (71), Expect = 0.41
 Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 4/43 (9%)
 Frame = +2

Query: 65  HSXTDHQSGSNQGCC----VSPSTGQTVPQQHHQIPIAQTCAP 181
           H+   H  G N+G        P+  QT P+QH Q+PI  T  P
Sbjct: 404 HANNHHHQGGNRGGAHHVGTPPNQQQTKPEQHPQLPIGATKQP 446


>11_05_0015 +
           18403367-18403729,18404500-18404565,18405121-18405234,
           18406109-18406297,18406335-18406667,18406708-18406743,
           18407806-18407919,18408506-18408999,18409293-18409716
          Length = 710

 Score = 32.3 bits (70), Expect = 0.54
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = +3

Query: 51  FCPELTQXQIIKVEVIKAAACRRPQVKQFHNSTIRFPLPKRVH 179
           F PELT  Q+ K+  +       P+   FHN + R P+P  V+
Sbjct: 397 FSPELTLVQVEKLRALFRPIIVMPESALFHNDSDRHPVPPAVY 439


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,014,771
Number of Sequences: 37544
Number of extensions: 148469
Number of successful extensions: 469
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 461
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 469
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2542098580
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)