Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP12_F_F05
         (1253 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    34   0.036
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    33   0.11 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    33   0.11 
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    26   9.5  

>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 34.3 bits (75), Expect = 0.036
 Identities = 25/104 (24%), Positives = 28/104 (26%), Gaps = 1/104 (0%)
 Frame = +2

Query: 740  AXPXXXPHAPXXXSHPXXXSTXXPPPXSS-PLHXXTRXXQPHXPXPSXXXXXXXXXXXIS 916
            A P   P        P   +   P P S  P         P  P PS           + 
Sbjct: 1149 APPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVP 1208

Query: 917  XXXXPXPRPPRXXPXPXQPPXXXPFARLPXXPVXRPSGPXXSXP 1048
                P   PP   P    PP   P A+ P  P      P  S P
Sbjct: 1209 PVPPPSTAPPVPTPSAGLPPVPVPTAKAPPVPAPSSEAPSVSTP 1252


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 309

 Score = 32.7 bits (71), Expect = 0.11
 Identities = 25/99 (25%), Positives = 29/99 (29%)
 Frame = +1

Query: 883  PXSHHXSPNHLXXXRPXPPXXPXPXXSXXAPXPXXLRSPPXXSRXPSFXAXXLPTRXXHS 1062
            P   H   +      P  P  P P      P      +PP  S  P   A   P      
Sbjct: 110  PKLRHIGKSSASAAPPSAPAPPTPQSELRPPTS----APPRPSIPPPSPASAPPIPSKAP 165

Query: 1063 APXXNLPSPXSXXSXXPXXPSEPSPPX*TXXXPPXXPXP 1179
                +LP P    +     PS PS P      PP  P P
Sbjct: 166  PIPSSLPPPAQPAAPVKSPPSAPSLPSAVPPMPPKVPPP 204


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 574

 Score = 32.7 bits (71), Expect = 0.11
 Identities = 40/171 (23%), Positives = 50/171 (29%), Gaps = 13/171 (7%)
 Frame = +1

Query: 700  PPXXXQSNAVPLTSXPXXXXARXXPXQPPXXXLHXRPXTXQLAXPXXHASLPTAXPSXLH 879
            PP        P++  P        P  PP   +           P      P   PS  +
Sbjct: 267  PPNSPPRPIAPVSMNPAINSTSKPPLPPPSSRVSAAALAANKKRPP-----PPPPPSRRN 321

Query: 880  X--PXSHHXSPNHLXXXRPXPPXX------PXPXXSXXAPXPXXLRSPPXXSRXP----S 1023
               P   + S N      P PP        P P     AP P   RS P   R P    S
Sbjct: 322  RGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPPLSS 381

Query: 1024 FXAXXLPTRXXHSAPXXNLPS-PXSXXSXXPXXPSEPSPPX*TXXXPPXXP 1173
              A   P     + P  + P+ P    +     P  P+PP      PP  P
Sbjct: 382  SRAVSNPPAPPPAIPGRSAPALPPLGNASRTSTPPVPTPPSLPPSAPPSLP 432



 Score = 30.3 bits (65), Expect = 0.58
 Identities = 39/150 (26%), Positives = 48/150 (32%), Gaps = 3/150 (2%)
 Frame = +1

Query: 700  PPXXXQSNAVPLTSXPXXXXARXXPXQPPXXXLHXRPXTXQLAXPXXHA---SLPTAXPS 870
            PP   +SNA    S P     R  P  PP       P T +   P   +   S P A P 
Sbjct: 339  PPPPPRSNAAG--SIPLPPQGRSAPPPPPP---RSAPSTGRQPPPLSSSRAVSNPPAPPP 393

Query: 871  XLHXPXSHHXSPNHLXXXRPXPPXXPXPXXSXXAPXPXXLRSPPXXSRXPSFXAXXLPTR 1050
             +    +    P         PP    P     AP      +PP         A  LP  
Sbjct: 394  AIPGRSAPALPPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPPSLPMGAP-AAPPLPP- 451

Query: 1051 XXHSAPXXNLPSPXSXXSXXPXXPSEPSPP 1140
               SAP    P P    +  P  P+ P+PP
Sbjct: 452  ---SAPIAP-PLPAGMPAAPPLPPAAPAPP 477


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 13/49 (26%), Positives = 18/49 (36%)
 Frame = +3

Query: 732  PHEXTPXXXRTXXPXXATXPXPPRPXXHLPARXSXPPRVXXNRTTLXPP 878
            P    P   ++  P   + P PP P   +P   S PP      +   PP
Sbjct: 1686 PVSTPPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPP 1734


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,847,974
Number of Sequences: 5004
Number of extensions: 17517
Number of successful extensions: 68
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 57
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 679614876
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)