Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP12_F_F04
         (896 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    36   0.008
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   2.7  
SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces...    27   4.8  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    27   4.8  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    27   4.8  

>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 35.9 bits (79), Expect = 0.008
 Identities = 16/36 (44%), Positives = 18/36 (50%)
 Frame = +3

Query: 789  PDIXXXXPPXTXPXSXPPPXSXPPLXXXPPSXXPTP 896
            P +    PP   P S PPP S PP+   PPS  P P
Sbjct: 1700 PQMSAPTPPPP-PMSVPPPPSAPPMPAGPPSAPPPP 1734


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 13/41 (31%), Positives = 14/41 (34%)
 Frame = +1

Query: 769 PPAFPXXPISXXXXLPXPXXXPXPXLXPXPPSXXXPPXXXP 891
           PP  P  PI+       P   P P   P PP    P    P
Sbjct: 447 PPLPPSAPIAPPLPAGMPAAPPLPPAAPAPPPAPAPAPAAP 487


>SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 857

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 22/71 (30%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
 Frame = -2

Query: 244 LSCSTRHTQFLMRFSSK-PCFLSSCTRPHLVNVLASEPTQRTTKAENN*LLHFDRIFRVT 68
           L+ S      L+ + SK P  LSS   P  +N L S PT  +  + ++   H   I  +T
Sbjct: 251 LNSSNTPESLLIDYQSKIPEDLSSSLLPLELNTLQSTPTSVSVGSASSQGTHEYSIINLT 310

Query: 67  SN*INQNLKGI 35
           SN  + +LK +
Sbjct: 311 SNHSSFSLKAL 321


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 10/23 (43%), Positives = 10/23 (43%)
 Frame = +3

Query: 810 PPXTXPXSXPPPXSXPPLXXXPP 878
           PP   P   PPP   PP    PP
Sbjct: 5   PPGNPPPPPPPPGFEPPSQPPPP 27


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 13/43 (30%), Positives = 16/43 (37%), Gaps = 1/43 (2%)
 Frame = +1

Query: 769 PPAFPXXPISXXXXLPXPXXXPXPXLXPXPPSXXXP-PXXXPP 894
           PP+ P  P       P     P P + P  P+   P P   PP
Sbjct: 124 PPSAPAPPTPQSELRPPTSAPPRPSIPPPSPASAPPIPSKAPP 166


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,723,472
Number of Sequences: 5004
Number of extensions: 48360
Number of successful extensions: 166
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 452494940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)