Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP12_F_F03
         (980 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    32   0.11 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    30   0.43 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    29   1.3  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    28   1.7  

>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 32.3 bits (70), Expect = 0.11
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = +3

Query: 918 HPXXPPXPPXXPPPXXPPPP 977
           +P  PP PP   PP  PPPP
Sbjct: 8   NPPPPPPPPGFEPPSQPPPP 27



 Score = 28.3 bits (60), Expect = 1.7
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = +3

Query: 921 PXXPPXPPXXPPPXXPPPP 977
           P  PP P   PP   PPPP
Sbjct: 10  PPPPPPPGFEPPSQPPPPP 28


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 30.3 bits (65), Expect = 0.43
 Identities = 21/78 (26%), Positives = 22/78 (28%), Gaps = 5/78 (6%)
 Frame = +3

Query: 759 PXXPXXXXPXPPXAAPXAHXXGAXXXTPPXRPTXXXPXRXPXXXXXXXXXXRAHPXXPPX 938
           P  P    P  P     +        TPP  P    P   P           A P  PP 
Sbjct: 393 PAIPGRSAPALPPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPS 452

Query: 939 PPXXPP-----PXXPPPP 977
            P  PP     P  PP P
Sbjct: 453 APIAPPLPAGMPAAPPLP 470



 Score = 28.3 bits (60), Expect = 1.7
 Identities = 21/73 (28%), Positives = 24/73 (32%)
 Frame = +3

Query: 759 PXXPXXXXPXPPXAAPXAHXXGAXXXTPPXRPTXXXPXRXPXXXXXXXXXXRAHPXXPPX 938
           P  P    P  P +AP +   GA    PP  P+       P             P  PP 
Sbjct: 421 PSLPPSAPPSLPPSAPPSLPMGAPA-APPLPPSAPIAPPLPAGM----------PAAPPL 469

Query: 939 PPXXPPPXXPPPP 977
           PP  P P   P P
Sbjct: 470 PPAAPAPPPAPAP 482


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 28.7 bits (61), Expect = 1.3
 Identities = 17/51 (33%), Positives = 17/51 (33%), Gaps = 5/51 (9%)
 Frame = +3

Query: 840 PPXRPTXXXPXRXPXXXXXXXXXX-RAHPXXPPXPP----XXPPPXXPPPP 977
           PP  P    P   P              P  PP PP      PPP  PPPP
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 28.3 bits (60), Expect = 1.7
 Identities = 14/46 (30%), Positives = 15/46 (32%)
 Frame = +3

Query: 837  TPPXRPTXXXPXRXPXXXXXXXXXXRAHPXXPPXPPXXPPPXXPPP 974
            TPP RP    P +               P   P  P  PP   PPP
Sbjct: 1689 TPPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPP 1734


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.316    0.147    0.490 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,090,023
Number of Sequences: 5004
Number of extensions: 13339
Number of successful extensions: 96
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 72
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 505288058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)