Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP12_F_F02
         (897 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC74.05 |rpl2702|rpl27-2|60S ribosomal protein L27|Schizosacch...    86   7e-18
SPBC685.07c |rpl2701|rpl27-1|60S ribosomal protein L27|Schizosac...    85   1e-17
SPAC144.08 |||DNAJ domain protein Jac1 |Schizosaccharomyces pomb...    26   6.3  

>SPCC74.05 |rpl2702|rpl27-2|60S ribosomal protein
           L27|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 136

 Score = 85.8 bits (203), Expect = 7e-18
 Identities = 34/52 (65%), Positives = 44/52 (84%)
 Frame = +3

Query: 207 PYGHAFVAGIDRYPRKVHKRMGKNKIHKRSKIKPFVKVVNYNHLMPTRYTVD 362
           P+GHA VAG++RYP KV K MG  +I KRS++KPF+KV+NYNHLMPTRY ++
Sbjct: 37  PFGHAVVAGVERYPLKVTKSMGAKRIAKRSRVKPFIKVINYNHLMPTRYALE 88



 Score = 30.3 bits (65), Expect = 0.39
 Identities = 10/22 (45%), Positives = 18/22 (81%)
 Frame = +2

Query: 131 LVLSGRYAGRKAIVVKNYDEGT 196
           LV  GR+AG+K ++++N D+G+
Sbjct: 12  LVTRGRFAGKKVVILQNVDQGS 33


>SPBC685.07c |rpl2701|rpl27-1|60S ribosomal protein
           L27|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 136

 Score = 85.0 bits (201), Expect = 1e-17
 Identities = 34/52 (65%), Positives = 44/52 (84%)
 Frame = +3

Query: 207 PYGHAFVAGIDRYPRKVHKRMGKNKIHKRSKIKPFVKVVNYNHLMPTRYTVD 362
           P+GHA VAG++RYP KV K MG  +I +RS++KPF+KVVNYNHLMPTRY ++
Sbjct: 37  PFGHAVVAGVERYPLKVTKSMGAKRIARRSRVKPFIKVVNYNHLMPTRYALE 88



 Score = 26.6 bits (56), Expect = 4.8
 Identities = 8/22 (36%), Positives = 17/22 (77%)
 Frame = +2

Query: 131 LVLSGRYAGRKAIVVKNYDEGT 196
           L+  GR+AG+K ++++  D+G+
Sbjct: 12  LITRGRFAGKKVVILQAIDQGS 33


>SPAC144.08 |||DNAJ domain protein Jac1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 225

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = +3

Query: 270 GKNKIHKRSKIKPFVKVVNYNH 335
           G + I  R K  P  K+VNYNH
Sbjct: 28  GNHWIFARFKFYPLNKIVNYNH 49


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,717,391
Number of Sequences: 5004
Number of extensions: 30579
Number of successful extensions: 80
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 80
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 452494940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)