Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP12_F_F02
         (897 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0951 - 21769342-21769752                                         73   2e-13
02_02_0470 - 10700092-10700505                                         73   3e-13
01_01_0538 - 3938389-3939727,3939828-3940203,3940299-3940516,394...    30   2.2  
09_04_0075 - 14340458-14340551,14340643-14340814,14340895-143410...    29   6.6  
05_04_0110 + 18058821-18058900,18059119-18059182,18059351-180594...    28   8.8  
04_04_1192 + 31611804-31612113,31612235-31614058,31614098-316148...    28   8.8  

>10_08_0951 - 21769342-21769752
          Length = 136

 Score = 73.3 bits (172), Expect = 2e-13
 Identities = 29/61 (47%), Positives = 45/61 (73%)
 Frame = +3

Query: 204 KPYGHAFVAGIDRYPRKVHKRMGKNKIHKRSKIKPFVKVVNYNHLMPTRYTVDFSFEKFS 383
           +PYGH  VAG+ +YP+KV ++    K  K+S++K F+K+VN+ HLMPTRYT+D   ++ +
Sbjct: 36  RPYGHCLVAGLAKYPKKVIRKDSAKKTAKKSRVKCFLKLVNFTHLMPTRYTLDVDLKEVA 95

Query: 384 A 386
           A
Sbjct: 96  A 96



 Score = 46.0 bits (104), Expect = 4e-05
 Identities = 32/125 (25%), Positives = 54/125 (43%), Gaps = 2/125 (1%)
 Frame = +2

Query: 131 LVLSGRYAGRKAIVVKNYDEGTSXQAVRACFRRWYRQVPPESAQEDGKE*NPQEVQDKAF 310
           ++L GR+AGRKA++V+ ++EGT  +    C      + P +  ++D  +   ++ + K F
Sbjct: 12  ILLQGRFAGRKAVIVRVFEEGTRDRPYGHCLVAGLAKYPKKVIRKDSAKKTAKKSRVKCF 71

Query: 311 REGCKL*SL--DANTLYS*LQL*KIQXXXXXXXXXXXXXXXNTRVRFEXRYKXGXNXWFF 484
            +      L     TL   L+                    + + R E R+K G N WFF
Sbjct: 72  LKLVNFTHLMPTRYTLDVDLKEVAAGPDALATRDKKVAACKSAKARLEDRFKTGKNRWFF 131

Query: 485 XXLXF 499
             L F
Sbjct: 132 TKLRF 136


>02_02_0470 - 10700092-10700505
          Length = 137

 Score = 72.9 bits (171), Expect = 3e-13
 Identities = 28/57 (49%), Positives = 43/57 (75%)
 Frame = +3

Query: 204 KPYGHAFVAGIDRYPRKVHKRMGKNKIHKRSKIKPFVKVVNYNHLMPTRYTVDFSFE 374
           +PYGH  VAG+ +YP+KV ++    K  K+S++K F+K+VN+ H+MPTRYT+D  F+
Sbjct: 36  RPYGHCLVAGLAKYPKKVIRKDSAKKTAKKSRVKCFLKLVNFTHIMPTRYTLDVDFK 92



 Score = 42.3 bits (95), Expect = 5e-04
 Identities = 29/126 (23%), Positives = 51/126 (40%), Gaps = 3/126 (2%)
 Frame = +2

Query: 131 LVLSGRYAGRKAIVVKNYDEGTSXQAVRACFRRWYRQVPPESAQEDGKE*NPQEVQDKAF 310
           ++L GRYAGRKA++V+ ++EGT  +    C      + P +  ++D  +   ++ + K F
Sbjct: 12  ILLQGRYAGRKAVIVRVFEEGTRDRPYGHCLVAGLAKYPKKVIRKDSAKKTAKKSRVKCF 71

Query: 311 REGCKL*SLDANTLYS*LQL*KIQ---XXXXXXXXXXXXXXXNTRVRFEXRYKXGXNXWF 481
            +      +        +    +                     + R E R+K G N WF
Sbjct: 72  LKLVNFTHIMPTRYTLDVDFKDVASGGPDALATRDKKVAACKAAKARLEERFKTGKNRWF 131

Query: 482 FXXLXF 499
           F  L F
Sbjct: 132 FTKLRF 137


>01_01_0538 -
           3938389-3939727,3939828-3940203,3940299-3940516,
           3940607-3940769,3940866-3941100,3941186-3941353
          Length = 832

 Score = 30.3 bits (65), Expect = 2.2
 Identities = 16/51 (31%), Positives = 22/51 (43%)
 Frame = +3

Query: 183 TTKVPPXKPYGHAFVAGIDRYPRKVHKRMGKNKIHKRSKIKPFVKVVNYNH 335
           T+ VPP  PY    + G  RYP +    + KN +  R  +       N NH
Sbjct: 614 TSSVPPSPPYRVTGMYGTPRYPAEKSVLLKKNNVIHRQGVGRSEGDANMNH 664


>09_04_0075 -
           14340458-14340551,14340643-14340814,14340895-14341066,
           14341617-14341811,14341886-14342053,14342150-14342335,
           14342797-14342881,14342896-14343206,14344222-14344569
          Length = 576

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = +3

Query: 348 RYTVDFSFEKFSAKDLKDLQNVRSCVSTREYVLXXGTK 461
           R  +DF FEKF +  L +L NV +C+   +Y    G K
Sbjct: 115 RQVLDFDFEKFCSISLSNL-NVYACLVCGKYYQGRGLK 151


>05_04_0110 +
           18058821-18058900,18059119-18059182,18059351-18059437,
           18059521-18059598,18060105-18060201,18060817-18060860,
           18061071-18061257,18061324-18061406
          Length = 239

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = -1

Query: 357 LYNVLASSDYSLQPSRKALSWT 292
           +YN L SSD S + SRK   WT
Sbjct: 46  IYNALTSSDQSSKESRKMALWT 67


>04_04_1192 + 31611804-31612113,31612235-31614058,31614098-31614842,
            31615047-31616835,31617136-31617163,31617343-31617794
          Length = 1715

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 4/59 (6%)
 Frame = +3

Query: 234  IDRYPRKVHKRMGKNKIHKRSKIKPFVKVVNYNHLMPTRYTVDFSF----EKFSAKDLK 398
            I  Y R++   M   ++ +  K+K F   +NY+H    R T  ++     E  S KDLK
Sbjct: 919  IGTYNRELTSNMRILRMERCDKLKDFTLFLNYDHFRVERKTWQWTILPFEEMHSLKDLK 977


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,467,727
Number of Sequences: 37544
Number of extensions: 206434
Number of successful extensions: 603
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 592
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 603
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2530383840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)