Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP12_F_F02
(897 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U89308-1|AAB48626.1| 136|Caenorhabditis elegans ribosomal prote... 90 2e-18
AF003143-5|AAK68266.1| 136|Caenorhabditis elegans Ribosomal pro... 90 2e-18
Z68117-2|CAA92178.1| 333|Caenorhabditis elegans Hypothetical pr... 29 3.4
AF000263-3|AAL77185.1| 697|Caenorhabditis elegans Hypothetical ... 29 3.4
AF000263-2|AAK21464.1| 755|Caenorhabditis elegans Hypothetical ... 29 3.4
AF000263-1|AAK21462.1| 781|Caenorhabditis elegans Hypothetical ... 29 3.4
Z49888-1|CAA90064.1| 3498|Caenorhabditis elegans Hypothetical pr... 29 4.5
>U89308-1|AAB48626.1| 136|Caenorhabditis elegans ribosomal protein
L27 homolog protein.
Length = 136
Score = 89.8 bits (213), Expect = 2e-18
Identities = 38/58 (65%), Positives = 48/58 (82%)
Frame = +3
Query: 204 KPYGHAFVAGIDRYPRKVHKRMGKNKIHKRSKIKPFVKVVNYNHLMPTRYTVDFSFEK 377
+ Y HA +AGIDRYP KV K MGK KI KR+K+KPF+KVV+Y HL+PTRY+VD +F+K
Sbjct: 36 RTYPHAIIAGIDRYPLKVTKDMGKKKIEKRNKLKPFLKVVSYTHLLPTRYSVDVAFDK 93
Score = 48.0 bits (109), Expect = 9e-06
Identities = 39/126 (30%), Positives = 52/126 (41%), Gaps = 3/126 (2%)
Frame = +2
Query: 131 LVLSGRYAGRKAIVVKNYDEGTSXQAVRACFRRWYRQVPPESAQEDGKE*NPQEVQDKAF 310
LVL G+YAGRKA+VVK DEG S + + P + ++ GK+ + + K F
Sbjct: 12 LVLRGKYAGRKAVVVKQQDEGVSDRTYPHAIIAGIDRYPLKVTKDMGKKKIEKRNKLKPF 71
Query: 311 REGCKL*SLDANTLYS---*LQL*KIQXXXXXXXXXXXXXXXNTRVRFEXRYKXGXNXWF 481
+ L T YS I + +FE RYK G N WF
Sbjct: 72 LKVVSYTHL-LPTRYSVDVAFDKTNINKEALKAPSKKRKALVEVKSKFEERYKTGKNKWF 130
Query: 482 FXXLXF 499
F L F
Sbjct: 131 FTKLRF 136
>AF003143-5|AAK68266.1| 136|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 27 protein.
Length = 136
Score = 89.8 bits (213), Expect = 2e-18
Identities = 38/58 (65%), Positives = 48/58 (82%)
Frame = +3
Query: 204 KPYGHAFVAGIDRYPRKVHKRMGKNKIHKRSKIKPFVKVVNYNHLMPTRYTVDFSFEK 377
+ Y HA +AGIDRYP KV K MGK KI KR+K+KPF+KVV+Y HL+PTRY+VD +F+K
Sbjct: 36 RTYPHAIIAGIDRYPLKVTKDMGKKKIEKRNKLKPFLKVVSYTHLLPTRYSVDVAFDK 93
Score = 48.0 bits (109), Expect = 9e-06
Identities = 39/126 (30%), Positives = 52/126 (41%), Gaps = 3/126 (2%)
Frame = +2
Query: 131 LVLSGRYAGRKAIVVKNYDEGTSXQAVRACFRRWYRQVPPESAQEDGKE*NPQEVQDKAF 310
LVL G+YAGRKA+VVK DEG S + + P + ++ GK+ + + K F
Sbjct: 12 LVLRGKYAGRKAVVVKQQDEGVSDRTYPHAIIAGIDRYPLKVTKDMGKKKIEKRNKLKPF 71
Query: 311 REGCKL*SLDANTLYS---*LQL*KIQXXXXXXXXXXXXXXXNTRVRFEXRYKXGXNXWF 481
+ L T YS I + +FE RYK G N WF
Sbjct: 72 LKVVSYTHL-LPTRYSVDVAFDKTNINKEALKAPSKKRKALVEVKSKFEERYKTGKNKWF 130
Query: 482 FXXLXF 499
F L F
Sbjct: 131 FTKLRF 136
>Z68117-2|CAA92178.1| 333|Caenorhabditis elegans Hypothetical
protein F45E6.4 protein.
Length = 333
Score = 29.5 bits (63), Expect = 3.4
Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Frame = -1
Query: 345 LASSDYSLQPSRKALSWTSCGFYS--FPSSCALSGGTCRYQRRKHARTAXSEVPSS*FLT 172
LAS++Y + P + A ++ +CG + FP +C TC Q + T EVP S +L
Sbjct: 195 LASANYGMCPCQHAFAFPACGMETGFFPGTCPEM--TCSSQDVNISETC-GEVPYSNYLM 251
Query: 171 TI 166
+
Sbjct: 252 NL 253
>AF000263-3|AAL77185.1| 697|Caenorhabditis elegans Hypothetical
protein T08B2.7c protein.
Length = 697
Score = 29.5 bits (63), Expect = 3.4
Identities = 19/50 (38%), Positives = 27/50 (54%)
Frame = +3
Query: 228 AGIDRYPRKVHKRMGKNKIHKRSKIKPFVKVVNYNHLMPTRYTVDFSFEK 377
AG++R ++ + NK KR KI K YNHL+P T+D+S K
Sbjct: 412 AGVERGQNQIATHL--NKQVKRRKINKLEKERIYNHLVP---TIDYSAMK 456
>AF000263-2|AAK21464.1| 755|Caenorhabditis elegans Hypothetical
protein T08B2.7b protein.
Length = 755
Score = 29.5 bits (63), Expect = 3.4
Identities = 19/50 (38%), Positives = 27/50 (54%)
Frame = +3
Query: 228 AGIDRYPRKVHKRMGKNKIHKRSKIKPFVKVVNYNHLMPTRYTVDFSFEK 377
AG++R ++ + NK KR KI K YNHL+P T+D+S K
Sbjct: 386 AGVERGQNQIATHL--NKQVKRRKINKLEKERIYNHLVP---TIDYSAMK 430
>AF000263-1|AAK21462.1| 781|Caenorhabditis elegans Hypothetical
protein T08B2.7a protein.
Length = 781
Score = 29.5 bits (63), Expect = 3.4
Identities = 19/50 (38%), Positives = 27/50 (54%)
Frame = +3
Query: 228 AGIDRYPRKVHKRMGKNKIHKRSKIKPFVKVVNYNHLMPTRYTVDFSFEK 377
AG++R ++ + NK KR KI K YNHL+P T+D+S K
Sbjct: 412 AGVERGQNQIATHL--NKQVKRRKINKLEKERIYNHLVP---TIDYSAMK 456
>Z49888-1|CAA90064.1| 3498|Caenorhabditis elegans Hypothetical protein
F47A4.2 protein.
Length = 3498
Score = 29.1 bits (62), Expect = 4.5
Identities = 16/54 (29%), Positives = 25/54 (46%)
Frame = -2
Query: 467 SXFCTXXQNVLAC*XAASYVLQVFQVFXAEFFKAEVNCITCWHQVIIVYNLHER 306
S F Q L A + V Q F V + +A+ + ITCW + + ++ H R
Sbjct: 1296 SFFMKHWQRFLLHPRACAIVNQCF-VLIQDMIRADDHMITCWGRTVAIFVFHAR 1348
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,474,794
Number of Sequences: 27780
Number of extensions: 168805
Number of successful extensions: 513
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 476
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 513
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2276333906
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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