Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP12_F_E24
         (917 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       27   0.32 
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   2.9  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 26.6 bits (56), Expect = 0.32
 Identities = 14/43 (32%), Positives = 14/43 (32%)
 Frame = +2

Query: 746 PPXXXPXPXPPPXXXPPXXXPXXPXPPXXXPPPXXXXPPXXXP 874
           P    P P P P   P       P  P   PPP    PP   P
Sbjct: 16  PSSGAPGPQPSPHQSPQAPQRGSPPNPSQGPPPGG--PPGAPP 56



 Score = 22.6 bits (46), Expect = 5.1
 Identities = 10/31 (32%), Positives = 10/31 (32%)
 Frame = +3

Query: 636 PPPPXXPXXPXXXXXPPXPXXPPXXGXPXXP 728
           P P   P  P     P     PP  G P  P
Sbjct: 25  PSPHQSPQAPQRGSPPNPSQGPPPGGPPGAP 55



 Score = 22.2 bits (45), Expect = 6.8
 Identities = 11/37 (29%), Positives = 11/37 (29%)
 Frame = +1

Query: 700 PPXXGXPXPPXXPXXPPXXXPXPPXXXXXXPPXPPXP 810
           PP  G P PP          P  P      P  P  P
Sbjct: 410 PPSAGAPMPPIPNMSNMSGMPPLPNMPGSMPTMPTMP 446


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 23.4 bits (48), Expect = 2.9
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = +1

Query: 790 PPXPPXPXPPPXXXXP 837
           PP P  P PPP    P
Sbjct: 338 PPKPAPPPPPPSSSGP 353


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 207,824
Number of Sequences: 438
Number of extensions: 11245
Number of successful extensions: 33
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29871933
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)