Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP12_F_E23
(896 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_03_0415 - 13661745-13664240,13664376-13664401,13665018-136650... 32 0.71
01_01_0401 + 3043634-3043894,3045610-3045849 31 1.6
12_02_1035 - 25570009-25571241,25571940-25573709,25573797-255751... 30 2.2
03_05_0373 + 23581812-23583293 30 2.2
07_01_0389 - 2915191-2915604,2915696-2915752,2915867-2915922,291... 29 6.6
04_04_0285 - 24136865-24137000,24137554-24137611,24138142-241414... 28 8.8
01_06_1831 + 40198371-40198625,40199614-40200141 28 8.8
01_06_0124 - 26692731-26697046,26698749-26698827,26698899-266989... 28 8.8
01_01_0933 - 7368672-7368785,7368860-7368895,7369581-7369715,736... 28 8.8
>05_03_0415 -
13661745-13664240,13664376-13664401,13665018-13665035,
13665914-13666181,13666531-13666598,13667102-13667243
Length = 1005
Score = 31.9 bits (69), Expect = 0.71
Identities = 21/53 (39%), Positives = 28/53 (52%)
Frame = -3
Query: 432 PCARCSASTVPKPPWPCRSRLRALPWRLLAKALSCCSTDSEPSFQALLKSCAS 274
P R SA T+ WP L A+ +R L AL+CC + S PS L++C S
Sbjct: 99 PGLRASAPTLR---WPFPRLLDAIAFRPLPCALACCGS-SAPSVVRHLRACGS 147
>01_01_0401 + 3043634-3043894,3045610-3045849
Length = 166
Score = 30.7 bits (66), Expect = 1.6
Identities = 24/75 (32%), Positives = 32/75 (42%), Gaps = 7/75 (9%)
Frame = -3
Query: 483 GGGVLLDVQGGPCGAPRPCARCSASTVP----KP---PWPCRSRLRALPWRLLAKALSCC 325
GGG + P +P A+C A VP +P P P R + L + C
Sbjct: 23 GGGGGKKLHQSPPPSPPEAAKCCADGVPVVMGEPLGAPAPPRESWNSGVLSCLGRNDEFC 82
Query: 324 STDSEPSFQALLKSC 280
S+D E SF+A K C
Sbjct: 83 SSDVEGSFEAFTKQC 97
>12_02_1035 -
25570009-25571241,25571940-25573709,25573797-25575118,
25575208-25575555,25576540-25576633
Length = 1588
Score = 30.3 bits (65), Expect = 2.2
Identities = 16/49 (32%), Positives = 29/49 (59%)
Frame = +1
Query: 490 EKLQAAVQNTVQESQKLAKKVSSNVQETNEKLAPKIKAAYDDFAKXTQE 636
EKLQ + + QE+Q+L KK+SS V E +++ ++ + + A+ E
Sbjct: 153 EKLQKEISSLSQENQELKKKISS-VLENSDRAESEVASLKEALAQQEAE 200
>03_05_0373 + 23581812-23583293
Length = 493
Score = 30.3 bits (65), Expect = 2.2
Identities = 14/26 (53%), Positives = 15/26 (57%)
Frame = -3
Query: 465 DVQGGPCGAPRPCARCSASTVPKPPW 388
D GG A +RCSAST PK PW
Sbjct: 53 DGAGGYGSAASSPSRCSASTPPKSPW 78
>07_01_0389 - 2915191-2915604,2915696-2915752,2915867-2915922,
2916053-2916113,2916243-2916365,2916505-2916537,
2916617-2916709,2916839-2916934,2917025-2917203,
2917344-2917530,2918051-2918184,2918311-2918518,
2918598-2918633,2918785-2919241,2919633-2919736,
2920489-2920569,2920646-2920697,2920837-2920876,
2920991-2921085,2921241-2921383,2921899-2922006,
2922120-2922221,2922302-2922348,2922425-2922554,
2923173-2923304,2923404-2923616,2923709-2923963,
2924053-2924799
Length = 1460
Score = 28.7 bits (61), Expect = 6.6
Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Frame = -1
Query: 644 LITSWVXFAKSS*AALILGASFSLVSCTFEDTFFANFWDSCTVFCTA-ACSFSRRAV 477
+ITS + AK S + L +C+ E+T FW + CT CS+ RR +
Sbjct: 1329 MITSKIPVAKRSLERFVFQVKALLHNCSTEET----FWMGTYILCTPNFCSWQRREI 1381
>04_04_0285 -
24136865-24137000,24137554-24137611,24138142-24141480,
24141789-24142218,24142861-24142928,24143015-24143165
Length = 1393
Score = 28.3 bits (60), Expect = 8.8
Identities = 15/51 (29%), Positives = 29/51 (56%)
Frame = +1
Query: 463 VEKNATALREKLQAAVQNTVQESQKLAKKVSSNVQETNEKLAPKIKAAYDD 615
+EK++ ++ E+ Q+ + Q+ +K AKKVSS E+ + K + Y +
Sbjct: 516 LEKSSKSILEETQSVGHTSQQKKRKKAKKVSSVDMESLDISGEKDQCGYGE 566
>01_06_1831 + 40198371-40198625,40199614-40200141
Length = 260
Score = 28.3 bits (60), Expect = 8.8
Identities = 19/44 (43%), Positives = 22/44 (50%)
Frame = +3
Query: 552 VLERAGD**ETGAQDQGRLRRLREXHPGGDQEDPXGRQRQAVSV 683
+L RAG E GA+ Q R RRL E H D G Q+ V V
Sbjct: 192 LLRRAG---EQGARPQERARRLEELHGRPDVAGEEGCQQVQVDV 232
>01_06_0124 -
26692731-26697046,26698749-26698827,26698899-26698955,
26699321-26699416
Length = 1515
Score = 28.3 bits (60), Expect = 8.8
Identities = 16/47 (34%), Positives = 31/47 (65%), Gaps = 1/47 (2%)
Frame = +1
Query: 466 EKNATALR-EKLQAAVQNTVQESQKLAKKVSSNVQETNEKLAPKIKA 603
EKNA L+ ++L+A ++N E ++ +VS+ +++ NE+L KI +
Sbjct: 832 EKNAALLQVQQLEANLKNLESELEQKQSQVSA-LEQANEELREKISS 877
>01_01_0933 -
7368672-7368785,7368860-7368895,7369581-7369715,
7369825-7369989,7370060-7370140,7370316-7370391,
7370479-7370612,7370706-7370798,7371860-7372188,
7372290-7372350,7372407-7372778
Length = 531
Score = 28.3 bits (60), Expect = 8.8
Identities = 13/41 (31%), Positives = 17/41 (41%)
Frame = -3
Query: 450 PCGAPRPCARCSASTVPKPPWPCRSRLRALPWRLLAKALSC 328
PC P P R ++T + PW R R + W L C
Sbjct: 26 PCTTPAPRMRSLSATTTRRPWRTGWRGRPMRWASLVVMKLC 66
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,730,281
Number of Sequences: 37544
Number of extensions: 287858
Number of successful extensions: 1284
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1235
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1283
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2530383840
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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