Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP12_F_E20
         (892 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC685.07c |rpl2701|rpl27-1|60S ribosomal protein L27|Schizosac...   116   3e-27
SPCC74.05 |rpl2702|rpl27-2|60S ribosomal protein L27|Schizosacch...   110   2e-25
SPCC622.18 |rpl6||60S ribosomal protein L6|Schizosaccharomyces p...    31   0.29 
SPAC144.08 |||DNAJ domain protein Jac1 |Schizosaccharomyces pomb...    28   2.1  
SPAC1805.13 |rpl14||60S ribosomal protein L14|Schizosaccharomyce...    27   3.6  
SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr...    26   8.3  

>SPBC685.07c |rpl2701|rpl27-1|60S ribosomal protein
           L27|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 136

 Score =  116 bits (280), Expect = 3e-27
 Identities = 52/100 (52%), Positives = 69/100 (69%), Gaps = 2/100 (2%)
 Frame = +2

Query: 203 PYGHAFVAGIDRYPRKVHKRMGKNKIHKRSKIKPFVKVVNYNHLMPTRYTVDFSFEK--F 376
           P+GHA VAG++RYP KV K MG  +I +RS++KPF+KVVNYNHLMPTRY ++    K   
Sbjct: 37  PFGHAVVAGVERYPLKVTKSMGAKRIARRSRVKPFIKVVNYNHLMPTRYALELDNLKGLI 96

Query: 377 SAKDLKDPAKRKKLRFNTRVRFEERYKSGKNKWFFXKLXF 496
           +A   K+P +R   R   +  FEE+Y+SGK+ WFF  L F
Sbjct: 97  TADTFKEPTQRSAARKTVKKTFEEKYQSGKSAWFFTPLRF 136



 Score = 37.5 bits (83), Expect = 0.003
 Identities = 13/31 (41%), Positives = 23/31 (74%)
 Frame = +1

Query: 100 KXMXPGKVVLVLSGRYAGRKAIVVKNYDEGT 192
           K + PGKV L+  GR+AG+K ++++  D+G+
Sbjct: 3   KILKPGKVALITRGRFAGKKVVILQAIDQGS 33


>SPCC74.05 |rpl2702|rpl27-2|60S ribosomal protein
           L27|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 136

 Score =  110 bits (265), Expect = 2e-25
 Identities = 48/100 (48%), Positives = 68/100 (68%), Gaps = 2/100 (2%)
 Frame = +2

Query: 203 PYGHAFVAGIDRYPRKVHKRMGKNKIHKRSKIKPFVKVVNYNHLMPTRYTVDFSFEK--F 376
           P+GHA VAG++RYP KV K MG  +I KRS++KPF+KV+NYNHLMPTRY ++    K   
Sbjct: 37  PFGHAVVAGVERYPLKVTKSMGAKRIAKRSRVKPFIKVINYNHLMPTRYALELDNLKGLV 96

Query: 377 SAKDLKDPAKRKKLRFNTRVRFEERYKSGKNKWFFXKLXF 496
           +     +P++R   +   +  FEE+Y++GK+ WFF  L F
Sbjct: 97  TPTTFSEPSQRSAAKKTVKNTFEEKYQTGKSAWFFTPLRF 136



 Score = 41.1 bits (92), Expect = 2e-04
 Identities = 15/31 (48%), Positives = 24/31 (77%)
 Frame = +1

Query: 100 KXMXPGKVVLVLSGRYAGRKAIVVKNYDEGT 192
           K + PGKV LV  GR+AG+K ++++N D+G+
Sbjct: 3   KILKPGKVALVTRGRFAGKKVVILQNVDQGS 33


>SPCC622.18 |rpl6||60S ribosomal protein L6|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 195

 Score = 30.7 bits (66), Expect = 0.29
 Identities = 10/34 (29%), Positives = 22/34 (64%)
 Frame = +1

Query: 85  PSKXGKXMXPGKVVLVLSGRYAGRKAIVVKNYDE 186
           P+K    + PG V ++L+GR+ G++ +V+   ++
Sbjct: 45  PTKLRASLAPGTVCILLAGRFRGKRVVVLSQLED 78


>SPAC144.08 |||DNAJ domain protein Jac1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 225

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
 Frame = +2

Query: 266 GKNKIHKRSKIKPFVKVVNYNHLMPTRYTVDF-SFEKFSAKDLKDP 400
           G + I  R K  P  K+VNYNH   +    +  +F K    D+ DP
Sbjct: 28  GNHWIFARFKFYPLNKIVNYNHFHSSSCQSEAKNFYKQFEGDISDP 73


>SPAC1805.13 |rpl14||60S ribosomal protein L14|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 134

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +1

Query: 115 GKVVLVLSGRYAGRKAIVVKNYD 183
           G+VVLV  G Y G+ A++V   D
Sbjct: 11  GRVVLVTKGEYTGKLAVIVDIVD 33


>SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 872

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = -1

Query: 397 VFQVFCAEFFKAEVNCITCWHQVIIVYNLHERLY 296
           V+QVFC  F  A+   I   +Q++ V NL E  Y
Sbjct: 315 VYQVFCTNFPNAQQLIIDNQNQLLKVANLLEPSY 348


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,821,750
Number of Sequences: 5004
Number of extensions: 33504
Number of successful extensions: 112
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 448490560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)