Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP12_F_E18
         (838 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC576.11 |rpl15||60S ribosomal protein L15|Schizosaccharomyces...   125   9e-30
SPAC1783.08c |rpl1502|rpl15-2|60S ribosomal protein L15b|Schizos...   125   9e-30

>SPCC576.11 |rpl15||60S ribosomal protein L15|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 201

 Score =  125 bits (301), Expect = 9e-30
 Identities = 66/137 (48%), Positives = 83/137 (60%)
 Frame = +3

Query: 99  GAYRYIQELYRKKLSDVMRFLLRVRVWQYRQLTRMHRAPRPTRPDKARRLGYRAKQXXXX 278
           GAY+Y++EL +KK SDV  FL RVR W+YRQ+  +HRA RP+RPDKARRLGY+AKQ    
Sbjct: 2   GAYKYLEELAKKKQSDVNLFLSRVRAWEYRQMNVIHRASRPSRPDKARRLGYKAKQGYVI 61

Query: 279 XXXXXXXXXXXXXXXXXATYGKPKSHGVNQLKPTRNLQSIAEERVGRRCGWSPCVELLLG 458
                             TYGKP   GVN LK  R+ +  AEERVGR C  +  V     
Sbjct: 62  YRIRVRRGGRKRPVPKGQTYGKPVHQGVNHLKYQRSARCTAEERVGRYCS-NLRVLNSYW 120

Query: 459 LHXXSSYKYFEVILXGP 509
           ++  ++YK+FEVIL  P
Sbjct: 121 VNQDATYKFFEVILVDP 137


>SPAC1783.08c |rpl1502|rpl15-2|60S ribosomal protein
           L15b|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 201

 Score =  125 bits (301), Expect = 9e-30
 Identities = 66/137 (48%), Positives = 83/137 (60%)
 Frame = +3

Query: 99  GAYRYIQELYRKKLSDVMRFLLRVRVWQYRQLTRMHRAPRPTRPDKARRLGYRAKQXXXX 278
           GAY+Y++EL +KK SDV  FL RVR W+YRQ+  +HRA RP+RPDKARRLGY+AKQ    
Sbjct: 2   GAYKYLEELAKKKQSDVNLFLSRVRAWEYRQMNVIHRASRPSRPDKARRLGYKAKQGYVI 61

Query: 279 XXXXXXXXXXXXXXXXXATYGKPKSHGVNQLKPTRNLQSIAEERVGRRCGWSPCVELLLG 458
                             TYGKP   GVN LK  R+ +  AEERVGR C  +  V     
Sbjct: 62  YRIRVRRGGRKRPVPKGQTYGKPVHQGVNHLKYQRSARCTAEERVGRYCS-NLRVLNSYW 120

Query: 459 LHXXSSYKYFEVILXGP 509
           ++  ++YK+FEVIL  P
Sbjct: 121 VNQDATYKFFEVILVDP 137


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,346,599
Number of Sequences: 5004
Number of extensions: 43215
Number of successful extensions: 98
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 412451140
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)