Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP12_F_E18
         (838 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0257 + 11145558-11145876,11148181-11148347,11149114-111493...   128   5e-30
03_05_0228 - 22137771-22138016,22138109-22138306,22138852-221390...   128   5e-30
05_02_0037 + 5883285-5884292                                           31   0.86 
03_05_0826 - 27994004-27994966,27995053-27996030,27996101-27996478     30   2.0  
05_06_0132 + 25893241-25893435,25894266-25894487,25894567-258948...    28   8.0  

>05_03_0257 +
           11145558-11145876,11148181-11148347,11149114-11149311,
           11149405-11149650
          Length = 309

 Score =  128 bits (309), Expect = 5e-30
 Identities = 65/134 (48%), Positives = 82/134 (61%)
 Frame = +3

Query: 99  GAYRYIQELYRKKLSDVMRFLLRVRVWQYRQLTRMHRAPRPTRPDKARRLGYRAKQXXXX 278
           GAY+Y+ EL+R+K SDVMRF+ RVR W+YRQ   + R  RPTRPDKARRLGY+AKQ    
Sbjct: 107 GAYKYVSELWRRKQSDVMRFVQRVRCWEYRQQPAIVRLTRPTRPDKARRLGYKAKQGYVV 166

Query: 279 XXXXXXXXXXXXXXXXXATYGKPKSHGVNQLKPTRNLQSIAEERVGRRCGWSPCVELLLG 458
                              YGKPK  G+ QLK  RN +S+AEER GR+ G    +     
Sbjct: 167 YRVRVRRGGRKRPVPKGIVYGKPKHQGITQLKFQRNKRSVAEERAGRKLGGLRVLN-SYW 225

Query: 459 LHXXSSYKYFEVIL 500
           ++  S+YKYFE+IL
Sbjct: 226 VNEDSTYKYFEIIL 239


>03_05_0228 -
           22137771-22138016,22138109-22138306,22138852-22139018,
           22139129-22139132
          Length = 204

 Score =  128 bits (309), Expect = 5e-30
 Identities = 65/134 (48%), Positives = 82/134 (61%)
 Frame = +3

Query: 99  GAYRYIQELYRKKLSDVMRFLLRVRVWQYRQLTRMHRAPRPTRPDKARRLGYRAKQXXXX 278
           GAY+Y+ EL+R+K SDVMRF+ RVR W+YRQ   + R  RPTRPDKARRLGY+AKQ    
Sbjct: 2   GAYKYVSELWRRKQSDVMRFVQRVRCWEYRQQPAIVRLTRPTRPDKARRLGYKAKQGYVV 61

Query: 279 XXXXXXXXXXXXXXXXXATYGKPKSHGVNQLKPTRNLQSIAEERVGRRCGWSPCVELLLG 458
                              YGKPK  G+ QLK  RN +S+AEER GR+ G    +     
Sbjct: 62  YRVRVRRGGRKRPVPKGIVYGKPKHQGITQLKFQRNKRSVAEERAGRKLGGLRVLN-SYW 120

Query: 459 LHXXSSYKYFEVIL 500
           ++  S+YKYFE+IL
Sbjct: 121 VNEDSTYKYFEIIL 134


>05_02_0037 + 5883285-5884292
          Length = 335

 Score = 31.5 bits (68), Expect = 0.86
 Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
 Frame = +2

Query: 179 AVPSVDSYAPRSQAHKAGQSPKTRLP---C*TRLCCIQNPCATWWPQASSC*GC 331
           AV   ++ AP ++  +A +SP        C  R CC  +P + WWP+     GC
Sbjct: 271 AVFPTEAAAPATEGKEAAKSPDAAAQGGWCLFR-CCWPSPPSVWWPRCGCGGGC 323


>03_05_0826 - 27994004-27994966,27995053-27996030,27996101-27996478
          Length = 772

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 14/39 (35%), Positives = 23/39 (58%)
 Frame = -3

Query: 395 GLKVARGLQLVDTMALGLAISGTLSNWTLAATTSHTDSE 279
           G +V  G++ V  +ALGL ++GT   W L   T  +D++
Sbjct: 591 GSEVPLGVEKVHELALGLELAGTRFLWALRKPTGVSDAD 629


>05_06_0132 +
           25893241-25893435,25894266-25894487,25894567-25894863,
           25894944-25895111,25895201-25895368,25895456-25895536,
           25895704-25895770,25895874-25895971,25896587-25896659,
           25896753-25896823,25896919-25896968,25897698-25897810,
           25898182-25898300,25898629-25898721,25899025-25899051,
           25899422-25899823,25900467-25900513,25900612-25900651,
           25900733-25900795,25900881-25901018,25901873-25902031,
           25902111-25902164,25902324-25902392,25902514-25902643,
           25902909-25902949,25903133-25903178,25903200-25903357,
           25903560-25903605,25903702-25903853,25904022-25904243
          Length = 1202

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 15/47 (31%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
 Frame = -3

Query: 428 PATTANTLLSNGLKVARGLQLVDTMALGLAIS-GTLSNWTLAATTSH 291
           P+ T  T L NG+K+A     +  +++GL I  G++   + ++ TSH
Sbjct: 119 PSKTKITTLPNGIKIASETSPIPAVSVGLYIDCGSVYETSSSSGTSH 165


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,203,567
Number of Sequences: 37544
Number of extensions: 329044
Number of successful extensions: 748
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 726
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 744
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2315199948
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)