Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP12_F_E18
         (838 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U88168-3|AAC24397.1|  204|Caenorhabditis elegans Ribosomal prote...   142   2e-34
AL132943-1|CAC14390.1| 1042|Caenorhabditis elegans Hypothetical ...    30   2.3  
Z81077-17|CAB82212.1| 2944|Caenorhabditis elegans Hypothetical p...    29   5.4  
Z75952-7|CAB82204.1| 2944|Caenorhabditis elegans Hypothetical pr...    29   5.4  
AL117202-13|CAB55075.1|  580|Caenorhabditis elegans Hypothetical...    28   7.2  
U46675-3|AAB52643.1|  375|Caenorhabditis elegans Activated in bl...    28   9.5  
U41994-9|AAK31523.1|  786|Caenorhabditis elegans Hypothetical pr...    28   9.5  

>U88168-3|AAC24397.1|  204|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 15 protein.
          Length = 204

 Score =  142 bits (345), Expect = 2e-34
 Identities = 69/137 (50%), Positives = 90/137 (65%)
 Frame = +3

Query: 99  GAYRYIQELYRKKLSDVMRFLLRVRVWQYRQLTRMHRAPRPTRPDKARRLGYRAKQXXXX 278
           GAY+Y+QE++RKK SD +R+LLR+R W YRQL+ +HR PRPTRP+KARRLGYRAKQ    
Sbjct: 2   GAYKYMQEIWRKKQSDALRYLLRIRTWHYRQLSAVHRVPRPTRPEKARRLGYRAKQGFVV 61

Query: 279 XXXXXXXXXXXXXXXXXATYGKPKSHGVNQLKPTRNLQSIAEERVGRRCGWSPCVELLLG 458
                             TYGKPK+HGVN+LK  ++ Q++AE R GRR G S  V     
Sbjct: 62  YRVRVRRGNRKRPVCKGQTYGKPKTHGVNELKNAKSKQAVAEGRAGRRLG-SLRVLNSYW 120

Query: 459 LHXXSSYKYFEVILXGP 509
           +   S+YK++EV+L  P
Sbjct: 121 VAEDSTYKFYEVVLIDP 137


>AL132943-1|CAC14390.1| 1042|Caenorhabditis elegans Hypothetical
            protein Y116F11B.3 protein.
          Length = 1042

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 19/46 (41%), Positives = 27/46 (58%)
 Frame = -3

Query: 395  GLKVARGLQLVDTMALGLAISGTLSNWTLAATTSHTDSEYNITLFS 258
            GLKVAR   LVD   +G+ + G ++  T  ATT+   + Y  TL+S
Sbjct: 972  GLKVAR--DLVD-QNIGVWLGGQVNITTTTATTTSNSTSYPSTLYS 1014


>Z81077-17|CAB82212.1| 2944|Caenorhabditis elegans Hypothetical
           protein F36A2.13 protein.
          Length = 2944

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +2

Query: 362 QPVEAHAQPSIHC*GACWPSLRVVSVC 442
           +P   H+QP +H   AC PS  V++ C
Sbjct: 847 EPPAMHSQPILHIATACRPSFNVLASC 873


>Z75952-7|CAB82204.1| 2944|Caenorhabditis elegans Hypothetical
           protein F36A2.13 protein.
          Length = 2944

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +2

Query: 362 QPVEAHAQPSIHC*GACWPSLRVVSVC 442
           +P   H+QP +H   AC PS  V++ C
Sbjct: 847 EPPAMHSQPILHIATACRPSFNVLASC 873


>AL117202-13|CAB55075.1|  580|Caenorhabditis elegans Hypothetical
           protein Y47D3A.16 protein.
          Length = 580

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 3/50 (6%)
 Frame = -3

Query: 245 SSGFVRPCGPGSAVHTS---QLTVLPYPHTQQKTHNIAQFFPIQLLNISV 105
           S+   RP   GS+  T       V+  PHT   T N    F + LLN+S+
Sbjct: 526 STTTTRPSNVGSSASTPIPLPKRVIKLPHTHTSTQNAQYSFMLLLLNVSL 575


>U46675-3|AAB52643.1|  375|Caenorhabditis elegans Activated in
           blocked unfolded proteinresponse protein 10 protein.
          Length = 375

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 18/47 (38%), Positives = 20/47 (42%)
 Frame = +2

Query: 281 QNPCATWWPQASSC*GCHLWQAQEPWCQPVEAHAQPSIHC*GACWPS 421
           QNPCA    Q S    C   Q  +P  Q     AQP   C  AC P+
Sbjct: 275 QNPCACQQAQPS----CDCAQQAQPTFQVQVQQAQPINQCVPACQPA 317


>U41994-9|AAK31523.1|  786|Caenorhabditis elegans Hypothetical
           protein F59A6.3 protein.
          Length = 786

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 26/81 (32%), Positives = 39/81 (48%), Gaps = 1/81 (1%)
 Frame = -3

Query: 425 ATTANTLLSNGLKVARGL-QLVDTMALGLAISGTLSNWTLAATTSHTDSEYNITLFSTVA 249
           +TT+ +L S  L  ++     V T      ISG   + T   TT+   SE + T  STV+
Sbjct: 374 STTSGSLFSTSLGSSQSPGSSVSTTPGPSTISGISQSTTSGPTTT---SEPSTTSGSTVS 430

Query: 248 *SSGFVRPCGPGSAVHTSQLT 186
            +SG     GP + + T+Q T
Sbjct: 431 DTSGPSTTSGPSTTLGTTQST 451


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,600,725
Number of Sequences: 27780
Number of extensions: 263512
Number of successful extensions: 589
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 555
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 587
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2066533546
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)