Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP12_F_E17
         (895 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19C7.07c |sen34||tRNA-splicing endonuclease subunit Sen34|Sc...    34   0.024
SPAC1F5.05c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    29   0.89 
SPAC328.06 |ubp2||ubiquitin C-terminal hydrolase Ubp2|Schizosacc...    27   3.6  
SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces po...    27   4.8  

>SPBC19C7.07c |sen34||tRNA-splicing endonuclease subunit
           Sen34|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 284

 Score = 34.3 bits (75), Expect = 0.024
 Identities = 23/94 (24%), Positives = 44/94 (46%), Gaps = 6/94 (6%)
 Frame = -3

Query: 290 HIPPTIIDPSGQLPELRTYSTRPVELFPKNA------AVFEIIDDLEPAIKLRLSSTDTS 129
           HI  T++    QLP+   +   P+EL  + A       +  I+DD +   +L  ++T   
Sbjct: 31  HILGTLVGTLPQLPQQNVFLGLPMELSKEEAFYLIEKGISYIVDDTKVHKQLLENTTKDD 90

Query: 128 NKHIIAKRNTLIGDMLFVAKSQQDKNQKNLKDSL 27
            K  + KR +L  D +  AK ++++ +  +   L
Sbjct: 91  VKQCLKKRQSLAYDQMIAAKKKENEKKIEIMKKL 124


>SPAC1F5.05c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 151

 Score = 29.1 bits (62), Expect = 0.89
 Identities = 18/51 (35%), Positives = 24/51 (47%)
 Frame = -3

Query: 281 PTIIDPSGQLPELRTYSTRPVELFPKNAAVFEIIDDLEPAIKLRLSSTDTS 129
           P  + P G  P + T  T PV +   NAA   +     PA   RLSS+ +S
Sbjct: 44  PEWLRPPGWQPPVNTGPTSPVSINASNAAPSNLKASYIPANPRRLSSSTSS 94


>SPAC328.06 |ubp2||ubiquitin C-terminal hydrolase
            Ubp2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1141

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 12/46 (26%), Positives = 28/46 (60%)
 Frame = +3

Query: 75   DKQHVPDQCISFCYDVLVTGVGRGESQFDSWL*IVNNLKHSCIFRE 212
            ++ H+ D  IS  YD+L   V RG++ F  +   +++ +++ ++R+
Sbjct: 1047 ERTHLFDNYISHSYDLLAVFVHRGQASFGHYWTYIHDFENN-VYRK 1091


>SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 743

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = +3

Query: 387 YILFVFVF*SE*CGNRLHIYVYETITNVLLLFIYFY 494
           ++ F FV  S   GNRL+IY   ++ ++L +   +Y
Sbjct: 535 FVPFAFVTFSITGGNRLYIYAASSVFSILCITALYY 570


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,417,768
Number of Sequences: 5004
Number of extensions: 46897
Number of successful extensions: 130
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 450492750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)