Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP12_F_E15
         (1420 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    29   1.2  
SPAC9G1.10c |||inositol polyphosphate phosphatase |Schizosacchar...    27   8.3  

>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 29.5 bits (63), Expect = 1.2
 Identities = 25/98 (25%), Positives = 34/98 (34%)
 Frame = +2

Query: 818  PXXNPPTXSXXRLAXPHSXPXXXXXXPTPLXXPRXPAPXPIQSLNQLPXAPPXXSPLNXP 997
            P  +PP+    +              P P    + P P P+ S +    APP   P   P
Sbjct: 987  PKDHPPSAPLSKPVSTSPAAPLARVPPVPKLSSKAP-PVPLPSAD----APPIPVPSTAP 1041

Query: 998  PAXXPXXTXPHLXXXXLXAPHSXXPXPXAXALXXPXXP 1111
            P   P  T P +      AP +  P P A +   P  P
Sbjct: 1042 PVPIPTSTPP-VPKSSSGAPSAPPPVP-APSSEIPSIP 1077



 Score = 28.3 bits (60), Expect = 2.7
 Identities = 17/58 (29%), Positives = 21/58 (36%), Gaps = 1/58 (1%)
 Frame = +2

Query: 902  PLXXPRXPAPXP-IQSLNQLPXAPPXXSPLNXPPAXXPXXTXPHLXXXXLXAPHSXXP 1072
            P   P  PAP   I S+     APP  +P   PP   P    P +    +  P    P
Sbjct: 1060 PSAPPPVPAPSSEIPSIPAPSGAPPVPAPSGIPPVPKPSVAAPPVPKPSVAVPPVPAP 1117



 Score = 27.1 bits (57), Expect = 6.3
 Identities = 12/44 (27%), Positives = 16/44 (36%)
 Frame = +2

Query: 896  PTPLXXPRXPAPXPIQSLNQLPXAPPXXSPLNXPPAXXPXXTXP 1027
            P P   P  P P P+ ++   P + P        P   P  T P
Sbjct: 961  PRPAAPPSIPPPLPVSNILSSPTSEPPKDHPPSAPLSKPVSTSP 1004



 Score = 26.6 bits (56), Expect = 8.3
 Identities = 24/96 (25%), Positives = 29/96 (30%), Gaps = 2/96 (2%)
 Frame = +2

Query: 830  PPTXSXXRLAXPHSXPXXXXXXPTP-LXXPRXPAPXPIQSLNQLPXA-PPXXSPLNXPPA 1003
            PP         P   P      P P +  P  P P     + +   A PP  +P   PP 
Sbjct: 1102 PPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPV 1161

Query: 1004 XXPXXTXPHLXXXXLXAPHSXXPXPXAXALXXPXXP 1111
              P    P      + AP S  P     A   P  P
Sbjct: 1162 PKPSVAAP-----PVPAPSSGIPPVPKPAAGVPPVP 1192


>SPAC9G1.10c |||inositol polyphosphate phosphatase
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1191

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 11/39 (28%), Positives = 17/39 (43%)
 Frame = +2

Query: 896  PTPLXXPRXPAPXPIQSLNQLPXAPPXXSPLNXPPAXXP 1012
            P P+  PR P P  ++++ Q         PL+  P   P
Sbjct: 269  PPPIPSPRPPQPVAVEAIQQSRAVISQQLPLHVSPRKPP 307


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,785,131
Number of Sequences: 5004
Number of extensions: 13267
Number of successful extensions: 48
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 46
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 788909666
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)