Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP12_F_E15
         (1420 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41543-12|AAZ91345.1|  401|Caenorhabditis elegans Groundhog (hed...    31   1.5  
AF067211-1|AAC16986.1|  455|Caenorhabditis elegans Hypothetical ...    31   2.0  
U97196-12|AAB52456.2|  564|Caenorhabditis elegans Hypothetical p...    29   6.0  
Z78013-1|CAB01425.3| 1140|Caenorhabditis elegans Hypothetical pr...    29   8.0  

>U41543-12|AAZ91345.1|  401|Caenorhabditis elegans Groundhog
            (hedgehog-like family)protein 7 protein.
          Length = 401

 Score = 31.5 bits (68), Expect = 1.5
 Identities = 25/91 (27%), Positives = 26/91 (28%)
 Frame = +2

Query: 863  PHSXPXXXXXXPTPLXXPRXPAPXPIQSLNQLPXAPPXXSPLNXPPAXXPXXTXPHLXXX 1042
            P S P      P P   P  PAP   QS      APP       PPA  P    P     
Sbjct: 15   PESAPAATTPQPPPPPPPPKPAPYVEQSAQPQQTAPP------PPPAPYPQQAVPAPAPP 68

Query: 1043 XLXAPHSXXPXPXAXALXXPXXPXXVXSRXP 1135
                P    P P       P     V +  P
Sbjct: 69   PAPYPQHAVPAPAPPLASYPQNAVPVPAPPP 99



 Score = 31.5 bits (68), Expect = 1.5
 Identities = 24/80 (30%), Positives = 25/80 (31%)
 Frame = +2

Query: 818  PXXNPPTXSXXRLAXPHSXPXXXXXXPTPLXXPRXPAPXPIQSLNQLPXAPPXXSPLNXP 997
            P   PP     + A P   P      P P      PAP P Q     P  PP   P   P
Sbjct: 93   PVPAPPPAPYPQHAVPAPAPP-----PAPYPQHAVPAPAPYQQQPPPPPPPPHYPP--PP 145

Query: 998  PAXXPXXTXPHLXXXXLXAP 1057
            P   P    PH       AP
Sbjct: 146  PHYPPPPPAPHSAYIDHSAP 165


>AF067211-1|AAC16986.1|  455|Caenorhabditis elegans Hypothetical
            protein B0205.10 protein.
          Length = 455

 Score = 31.1 bits (67), Expect = 2.0
 Identities = 17/65 (26%), Positives = 21/65 (32%)
 Frame = +2

Query: 833  PTXSXXRLAXPHSXPXXXXXXPTPLXXPRXPAPXPIQSLNQLPXAPPXXSPLNXPPAXXP 1012
            PT      A     P       TP   P  PAP P+Q   Q+    P  +P    P    
Sbjct: 105  PTPDAPAAAPVQETPQVAPAPETPAPAPETPAPAPVQETPQVVAPAPEPTPEAAAPVPAD 164

Query: 1013 XXTXP 1027
              + P
Sbjct: 165  PQSSP 169


>U97196-12|AAB52456.2|  564|Caenorhabditis elegans Hypothetical
            protein B0207.1 protein.
          Length = 564

 Score = 29.5 bits (63), Expect = 6.0
 Identities = 22/70 (31%), Positives = 26/70 (37%), Gaps = 2/70 (2%)
 Frame = +2

Query: 875  PXXXXXXPTPLXXPRXPAPXPIQSLN--QLPXAPPXXSPLNXPPAXXPXXTXPHLXXXXL 1048
            P      PTP+  P  P P P  +LN  Q P  P   +P   PP   P    P +     
Sbjct: 84   PTVQEPLPTPVKTP--PLPRPPGNLNPVQQPQIPVQRTPPQCPPPPVPH--PPQITQMAP 139

Query: 1049 XAPHSXXPXP 1078
              P S  P P
Sbjct: 140  ILPTSPAPPP 149


>Z78013-1|CAB01425.3| 1140|Caenorhabditis elegans Hypothetical protein
            F15B9.4 protein.
          Length = 1140

 Score = 29.1 bits (62), Expect = 8.0
 Identities = 21/74 (28%), Positives = 24/74 (32%), Gaps = 4/74 (5%)
 Frame = +2

Query: 902  PLXXPRXPAPXPIQSLN-QLPXAPPXXSPLNXPPA---XXPXXTXPHLXXXXLXAPHSXX 1069
            PL     P P P+ S+N   P  PP    L   P      P    P +      AP    
Sbjct: 481  PLINTNAPPPPPMPSINGHAPNPPPPPPLLGIAPMSTNAPPPPPMPGMAPLSTGAPTPPP 540

Query: 1070 PXPXAXALXXPXXP 1111
            P P   A   P  P
Sbjct: 541  PPPVGMANGGPPPP 554


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,007,694
Number of Sequences: 27780
Number of extensions: 108794
Number of successful extensions: 394
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 264
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 376
length of database: 12,740,198
effective HSP length: 84
effective length of database: 10,406,678
effective search space used: 4037791064
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)