Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP12_F_E13
         (857 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1396 - 26742694-26742915,26743736-26743771                       41   0.001
02_05_0323 - 27928385-27928534,27930326-27930430                       37   0.024
11_01_0184 - 1444246-1444434,1446291-1446719                           36   0.041
12_01_0183 - 1350451-1350477,1350887-1350969,1350977-1352696,135...    33   0.39 

>08_02_1396 - 26742694-26742915,26743736-26743771
          Length = 85

 Score = 41.1 bits (92), Expect = 0.001
 Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = +2

Query: 296 LTDTCWDXCM-GXPSTRLDSKTEVCIMNCVXXFIDATTYITKR 421
           LT  CWD C+   P ++  S    C+ NC   F+D +  I KR
Sbjct: 39  LTSVCWDKCITSTPGSKFSSGETTCLTNCAQRFLDMSVIIAKR 81


>02_05_0323 - 27928385-27928534,27930326-27930430
          Length = 84

 Score = 36.7 bits (81), Expect = 0.024
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = +2

Query: 308 CWDXCMGXPSTRLDSKTEVCIMNCVXXFIDATTYITKRLMSTTK 439
           C+  C+  P + L      CI  CV  +I+AT  +++ L S+T+
Sbjct: 41  CFAKCVTKPGSSLSGSESSCISRCVDRYIEATGIVSRALFSSTR 84


>11_01_0184 - 1444246-1444434,1446291-1446719
          Length = 205

 Score = 35.9 bits (79), Expect = 0.041
 Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
 Frame = +2

Query: 296 LTDTCWDXCM-GXPSTRLDSKTEVCIMNCVXXFIDATTYITKRLMS 430
           LTD CWD C+ G   +   +    C+ NC   F +    I +R+ S
Sbjct: 158 LTDVCWDKCITGSIGSSFSNSEASCLSNCAKRFFELKMLIVQRVSS 203


>12_01_0183 -
           1350451-1350477,1350887-1350969,1350977-1352696,
           1354258-1354428,1355892-1355939
          Length = 682

 Score = 32.7 bits (71), Expect = 0.39
 Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
 Frame = +2

Query: 296 LTDTCWDXCM-GXPSTRLDSKTEVCIMNCVXXFID 397
           LTD CWD C+ G   +   +    C+ NC   F++
Sbjct: 31  LTDVCWDKCITGSIGSSFSNSEASCLSNCAKRFLE 65


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,004,530
Number of Sequences: 37544
Number of extensions: 154220
Number of successful extensions: 196
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 195
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 195
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2397465936
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)