Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP12_F_E13
         (857 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024765-4|AAF60525.1|   83|Caenorhabditis elegans Human ddp rel...    51   1e-06
AF150086-1|AAD39993.1|   83|Caenorhabditis elegans small zinc fi...    49   4e-06

>AC024765-4|AAF60525.1|   83|Caenorhabditis elegans Human ddp
           related protein 1 protein.
          Length = 83

 Score = 50.8 bits (116), Expect = 1e-06
 Identities = 20/47 (42%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
 Frame = +2

Query: 290 HGLTDTCWDXCMGX--PSTRLDSKTEVCIMNCVXXFIDATTYITKRL 424
           H LT  CWD C     P +++D KT+ CI NCV   IDA+ ++ + L
Sbjct: 29  HTLTGRCWDVCFADYRPPSKMDGKTQTCIQNCVNRMIDASNFMVEHL 75


>AF150086-1|AAD39993.1|   83|Caenorhabditis elegans small zinc
           finger-like protein protein.
          Length = 83

 Score = 49.2 bits (112), Expect = 4e-06
 Identities = 19/47 (40%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
 Frame = +2

Query: 290 HGLTDTCWDXCMGX--PSTRLDSKTEVCIMNCVXXFIDATTYITKRL 424
           H LT  CWD C     P +++D KT+ C  NCV   IDA+ ++ + L
Sbjct: 29  HTLTGRCWDVCFADYRPPSKMDGKTQTCFQNCVNRMIDASNFMVEHL 75


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,737,965
Number of Sequences: 27780
Number of extensions: 154267
Number of successful extensions: 206
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 202
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 204
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2139963672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)