Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP12_F_E11
(909 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 27 0.16
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 31 0.30
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 30 0.52
SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||... 29 0.69
SPCC622.15c |||sequence orphan|Schizosaccharomyces pombe|chr 3||... 28 1.6
SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr 1|... 24 1.6
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 27 3.7
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 27 3.7
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 27 3.7
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 27 4.9
SPBC1685.01 |pmp1||dual-specificity MAP kinase phosphatase Pmp1|... 27 4.9
SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase Wis4|Schizo... 27 4.9
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S... 26 6.4
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr... 26 6.4
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1... 26 6.4
SPCP1E11.02 |ppk38||Ark1/Prk1 family protein kinase Ppk38|Schizo... 26 8.5
SPBC4.02c |||conserved fungal protein|Schizosaccharomyces pombe|... 26 8.5
SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces pom... 26 8.5
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 27.1 bits (57), Expect = 3.7
Identities = 9/14 (64%), Positives = 9/14 (64%)
Frame = +1
Query: 865 PXXXPPPXPPPPPP 906
P PP PPPPPP
Sbjct: 184 PSDYNPPPPPPPPP 197
Score = 25.0 bits (52), Expect(2) = 0.16
Identities = 10/29 (34%), Positives = 10/29 (34%)
Frame = +1
Query: 814 PXXPPXPXXTPXXXXXXPXXXPPPXPPPP 900
P P P PPP PPPP
Sbjct: 169 PSFQPPSAAAPATSLPSDYNPPPPPPPPP 197
Score = 25.0 bits (52), Expect(2) = 0.16
Identities = 8/10 (80%), Positives = 8/10 (80%)
Frame = +1
Query: 877 PPPXPPPPPP 906
P P PPPPPP
Sbjct: 234 PLPAPPPPPP 243
Score = 23.0 bits (47), Expect(2) = 4.5
Identities = 8/13 (61%), Positives = 8/13 (61%)
Frame = +1
Query: 514 SAYXXXXPPPPPP 552
S Y PPPPPP
Sbjct: 185 SDYNPPPPPPPPP 197
Score = 21.8 bits (44), Expect(2) = 4.5
Identities = 8/16 (50%), Positives = 8/16 (50%)
Frame = +1
Query: 535 PPPPPPXXXXRPGAXD 582
PPPPPP A D
Sbjct: 190 PPPPPPPPAVEDQAAD 205
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 30.7 bits (66), Expect = 0.30
Identities = 12/30 (40%), Positives = 12/30 (40%)
Frame = +1
Query: 814 PXXPPXPXXTPXXXXXXPXXXPPPXPPPPP 903
P PP P P P PP PPPP
Sbjct: 1705 PTPPPPPMSVPPPPSAPPMPAGPPSAPPPP 1734
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 29.9 bits (64), Expect = 0.52
Identities = 11/25 (44%), Positives = 11/25 (44%)
Frame = +1
Query: 832 PXXTPXXXXXXPXXXPPPXPPPPPP 906
P P P PP PPPPPP
Sbjct: 5 PPGNPPPPPPPPGFEPPSQPPPPPP 29
Score = 26.6 bits (56), Expect = 4.9
Identities = 12/28 (42%), Positives = 12/28 (42%)
Frame = +1
Query: 814 PXXPPXPXXTPXXXXXXPXXXPPPXPPP 897
P PP P P P PPP PPP
Sbjct: 6 PGNPPPPPPPPGFE---PPSQPPPPPPP 30
>SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1367
Score = 29.5 bits (63), Expect = 0.69
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = -2
Query: 431 NFLRYSLLPTASTRERGRLEVRSALGRVHVICTVVDRFV 315
NF ++P STR+R + +R G +H+IC D +
Sbjct: 756 NFRVLDIIPFTSTRKRMSVIIRDEDGIIHLICKGADTVI 794
>SPCC622.15c |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 557
Score = 28.3 bits (60), Expect = 1.6
Identities = 16/39 (41%), Positives = 19/39 (48%), Gaps = 4/39 (10%)
Frame = +3
Query: 291 DYNPNG-NGYEPIDNGAYYVDPPQG---RPYFKPTPFPG 395
DYN N N Y PI N Y+++ G PYF PG
Sbjct: 119 DYNNNRKNFYPPIQNSTYFINATGGIDSMPYFGLNNAPG 157
>SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1372
Score = 23.8 bits (49), Expect(2) = 1.6
Identities = 8/13 (61%), Positives = 8/13 (61%)
Frame = +1
Query: 865 PXXXPPPXPPPPP 903
P PPP P PPP
Sbjct: 802 PFKAPPPAPLPPP 814
Score = 22.6 bits (46), Expect(2) = 1.6
Identities = 7/10 (70%), Positives = 7/10 (70%)
Frame = +1
Query: 877 PPPXPPPPPP 906
P P PPP PP
Sbjct: 808 PAPLPPPAPP 817
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 27.1 bits (57), Expect = 3.7
Identities = 11/31 (35%), Positives = 12/31 (38%)
Frame = +1
Query: 814 PXXPPXPXXTPXXXXXXPXXXPPPXPPPPPP 906
P P P +P P PP P PPP
Sbjct: 174 PAQPAAPVKSPPSAPSLPSAVPPMPPKVPPP 204
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 27.1 bits (57), Expect = 3.7
Identities = 11/31 (35%), Positives = 11/31 (35%)
Frame = +1
Query: 814 PXXPPXPXXTPXXXXXXPXXXPPPXPPPPPP 906
P PP P P P PP P P P
Sbjct: 454 PIAPPLPAGMPAAPPLPPAAPAPPPAPAPAP 484
Score = 26.2 bits (55), Expect = 6.4
Identities = 12/32 (37%), Positives = 12/32 (37%), Gaps = 1/32 (3%)
Frame = +1
Query: 814 PXXPPXPXXTPXXXXXXPXXXP-PPXPPPPPP 906
P PP P P P PP P PPP
Sbjct: 447 PPLPPSAPIAPPLPAGMPAAPPLPPAAPAPPP 478
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 27.1 bits (57), Expect = 3.7
Identities = 14/38 (36%), Positives = 14/38 (36%), Gaps = 7/38 (18%)
Frame = +1
Query: 814 PXXPPXPXXTPXXXXXXPXXXPP-------PXPPPPPP 906
P P P P P PP P PPPPPP
Sbjct: 746 PAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 26.6 bits (56), Expect = 4.9
Identities = 14/31 (45%), Positives = 14/31 (45%)
Frame = -2
Query: 905 GGGGGGXGGGXXXGXXXXXXGVXXGXGGXXG 813
GGG GG GGG G G G GG G
Sbjct: 241 GGGPGGFGGG-LGGFGGGPGGFGGGPGGHGG 270
>SPBC1685.01 |pmp1||dual-specificity MAP kinase phosphatase
Pmp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 278
Score = 26.6 bits (56), Expect = 4.9
Identities = 14/33 (42%), Positives = 16/33 (48%)
Frame = +3
Query: 285 PKDYNPNGNGYEPIDNGAYYVDPPQGRPYFKPT 383
PK PN N +P NG + PP Y KPT
Sbjct: 46 PKASKPNSN--QPYPNGPVCIYPPNIYLYAKPT 76
>SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase
Wis4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1401
Score = 26.6 bits (56), Expect = 4.9
Identities = 10/36 (27%), Positives = 17/36 (47%)
Frame = +2
Query: 317 RTYRQRCILRGPSPRPTLLQAYPFPWCSRWEVKNIL 424
R + ++C R P RP + PW + + K I+
Sbjct: 1280 RDFIEQCFERDPEQRPRAVDLLTHPWITDFRKKTII 1315
>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
Cap1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 551
Score = 26.2 bits (55), Expect = 6.4
Identities = 8/9 (88%), Positives = 8/9 (88%)
Frame = +1
Query: 877 PPPXPPPPP 903
PPP PPPPP
Sbjct: 306 PPPPPPPPP 314
Score = 26.2 bits (55), Expect = 6.4
Identities = 8/9 (88%), Positives = 8/9 (88%)
Frame = +1
Query: 880 PPXPPPPPP 906
PP PPPPPP
Sbjct: 306 PPPPPPPPP 314
>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 305
Score = 26.2 bits (55), Expect = 6.4
Identities = 12/30 (40%), Positives = 12/30 (40%)
Frame = -2
Query: 902 GGGGGXGGGXXXGXXXXXXGVXXGXGGXXG 813
GG GG GGG G G GG G
Sbjct: 23 GGRGGFGGGRGGARGGGRGGARGGRGGRGG 52
>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1841
Score = 26.2 bits (55), Expect = 6.4
Identities = 8/9 (88%), Positives = 8/9 (88%)
Frame = +1
Query: 877 PPPXPPPPP 903
PPP PPPPP
Sbjct: 945 PPPPPPPPP 953
Score = 26.2 bits (55), Expect = 6.4
Identities = 8/9 (88%), Positives = 8/9 (88%)
Frame = +1
Query: 880 PPXPPPPPP 906
PP PPPPPP
Sbjct: 945 PPPPPPPPP 953
>SPCP1E11.02 |ppk38||Ark1/Prk1 family protein kinase
Ppk38|Schizosaccharomyces pombe|chr 3|||Manual
Length = 650
Score = 25.8 bits (54), Expect = 8.5
Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = +3
Query: 207 PDPFFAQPTVGNGYEP-IDNRPYIVNPPKDYNPNGNGYEPIDNGAY 341
P P A + + P +++ PY+ N D+N NGN P+ +Y
Sbjct: 353 PQPASAMKPMASPMLPNVNSMPYLSNG--DHNNNGNTSSPVSRFSY 396
>SPBC4.02c |||conserved fungal protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 456
Score = 25.8 bits (54), Expect = 8.5
Identities = 12/46 (26%), Positives = 24/46 (52%)
Frame = +3
Query: 75 LPVITRDHIKMKFFMIFVLALLAMANAQDPVRVVENADSVVINDPD 212
+PV HI+ FF I + ++ +A R +++S +I +P+
Sbjct: 276 VPVAELHHIRNAFFNIPIAEIMESVSANSSRRNSHDSNSTIICEPE 321
>SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 910
Score = 25.8 bits (54), Expect = 8.5
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = -2
Query: 146 HSQQSEDENHEEFHFYMITSYHRQKILKLCIQNLKGSSL 30
H S+D+ ++ + HR +LKLC+ L GS L
Sbjct: 646 HLDSSQDDVLIDYLVKSNSVTHRALLLKLCVNKLLGSLL 684
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,766,959
Number of Sequences: 5004
Number of extensions: 54235
Number of successful extensions: 330
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 261
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 460503700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -