Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP12_F_E11
         (909 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    26   0.54 
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   2.9  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   2.9  
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    23   5.1  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   5.1  
AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor p...    22   6.7  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    22   6.7  

>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 25.8 bits (54), Expect = 0.54
 Identities = 8/10 (80%), Positives = 8/10 (80%)
 Frame = +1

Query: 877 PPPXPPPPPP 906
           P P PPPPPP
Sbjct: 339 PKPAPPPPPP 348



 Score = 23.0 bits (47), Expect = 3.8
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +1

Query: 880 PPXPPPPPP 906
           PP P PPPP
Sbjct: 338 PPKPAPPPP 346



 Score = 22.6 bits (46), Expect = 5.1
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +1

Query: 877 PPPXPPPPPP 906
           PP   PPPPP
Sbjct: 338 PPKPAPPPPP 347


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 23.4 bits (48), Expect = 2.9
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +1

Query: 877  PPPXPPPP 900
            PPP PPPP
Sbjct: 1355 PPPPPPPP 1362



 Score = 23.4 bits (48), Expect = 2.9
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +1

Query: 880  PPXPPPPP 903
            PP PPPPP
Sbjct: 1355 PPPPPPPP 1362



 Score = 23.4 bits (48), Expect = 2.9
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +1

Query: 883  PXPPPPPP 906
            P PPPPPP
Sbjct: 1355 PPPPPPPP 1362



 Score = 22.2 bits (45), Expect = 6.7
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +2

Query: 335  CILRGPSPRPTLLQA 379
            C+LR  +P P +L+A
Sbjct: 1106 CVLRASTPAPVVLEA 1120



 Score = 22.2 bits (45), Expect = 6.7
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = +1

Query: 514  SAYXXXXPPPPPP 552
            +A+    PPPPPP
Sbjct: 1348 TAWRQQQPPPPPP 1360


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.4 bits (48), Expect = 2.9
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +1

Query: 883  PXPPPPPP 906
            P PPPPPP
Sbjct: 1857 PEPPPPPP 1864


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 22.6 bits (46), Expect = 5.1
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -3

Query: 244 PFPTVGWAKNGSGSLITT 191
           P+P   WAKN + S IT+
Sbjct: 107 PYPNWSWAKNQNCSGITS 124


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.6 bits (46), Expect = 5.1
 Identities = 9/27 (33%), Positives = 10/27 (37%)
 Frame = +1

Query: 826 PXPXXTPXXXXXXPXXXPPPXPPPPPP 906
           P P  +P      P    PP P   PP
Sbjct: 21  PGPQPSPHQSPQAPQRGSPPNPSQGPP 47


>AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor
           protein.
          Length = 139

 Score = 22.2 bits (45), Expect = 6.7
 Identities = 6/15 (40%), Positives = 11/15 (73%)
 Frame = +2

Query: 209 RSILCPAYCRKRLRT 253
           +SI+C  +C++R  T
Sbjct: 74  KSIICKCFCKRRTNT 88


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 22.2 bits (45), Expect = 6.7
 Identities = 6/15 (40%), Positives = 11/15 (73%)
 Frame = +2

Query: 209 RSILCPAYCRKRLRT 253
           +SI+C  +C++R  T
Sbjct: 522 KSIICKCFCKRRTNT 536


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 219,828
Number of Sequences: 438
Number of extensions: 5721
Number of successful extensions: 28
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29509116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)