Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP12_F_E07
         (1181 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    31   0.41 
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    30   0.54 
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    27   3.8  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    27   3.8  

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 574

 Score = 30.7 bits (66), Expect = 0.41
 Identities = 25/105 (23%), Positives = 36/105 (34%), Gaps = 4/105 (3%)
 Frame = +1

Query: 805  SPGPRXPPLAXSXLLPXTPXXRXXLPAX----YPSXANXAKLXPPXSHSLRXLPTTPRPD 972
            S G + PPL+ S  +   P     +P       P   N ++   P   +   LP +  P 
Sbjct: 371  STGRQPPPLSSSRAVSNPPAPPPAIPGRSAPALPPLGNASRTSTPPVPTPPSLPPSAPPS 430

Query: 973  XXXLXXPPTPXXXVPXAPXPPXXXLXXPSARSGXPXHTPXRXCSP 1107
                  PP+     P AP  P      P   +G P   P    +P
Sbjct: 431  LPP-SAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAP 474



 Score = 26.2 bits (55), Expect = 8.9
 Identities = 25/95 (26%), Positives = 30/95 (31%), Gaps = 1/95 (1%)
 Frame = +1

Query: 808  PGPRXPPLAXSX-LLPXTPXXRXXLPAXYPSXANXAKLXPPXSHSLRXLPTTPRPDXXXL 984
            P P  PP + +   +P  P  R   P   P  A      PP   S R +           
Sbjct: 337  PPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSN--------- 387

Query: 985  XXPPTPXXXVPXAPXPPXXXLXXPSARSGXPXHTP 1089
              PP P   +P    P    L   S  S  P  TP
Sbjct: 388  --PPAPPPAIPGRSAPALPPLGNASRTSTPPVPTP 420


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 273

 Score = 30.3 bits (65), Expect = 0.54
 Identities = 13/25 (52%), Positives = 13/25 (52%)
 Frame = -2

Query: 1030 GXGPGGXRGXEWXXGGGXGGXXXGL 956
            G GPGG  G     GGG GG   GL
Sbjct: 227  GGGPGGFEGGPGGFGGGPGGFGGGL 251



 Score = 27.1 bits (57), Expect = 5.1
 Identities = 12/24 (50%), Positives = 12/24 (50%)
 Frame = -2

Query: 1030 GXGPGGXRGXEWXXGGGXGGXXXG 959
            G GPGG  G     GGG GG   G
Sbjct: 241  GGGPGGFGGGLGGFGGGPGGFGGG 264


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 27.5 bits (58), Expect = 3.8
 Identities = 18/56 (32%), Positives = 21/56 (37%), Gaps = 5/56 (8%)
 Frame = +3

Query: 603 TXAPP----PXPXPLXSPPXXQ*XXPXHXXXSPPXTXPIXXK-PPRASTFXAXPPP 755
           T APP    P P P  +PP      P      PP       K PP A +  +  PP
Sbjct: 141 TSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLPSAVPP 196


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 27.5 bits (58), Expect = 3.8
 Identities = 25/113 (22%), Positives = 32/113 (28%), Gaps = 3/113 (2%)
 Frame = +1

Query: 805  SPGPRXPPLAXSXLLPXTPXXRXXLPAXYPSXANXAKLXPPXSHSLRXLPTT---PRPDX 975
            +P    P    S   P  P     +P      A    + PP        P+    P P  
Sbjct: 1154 APSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPP 1213

Query: 976  XXLXXPPTPXXXVPXAPXPPXXXLXXPSARSGXPXHTPXRXCSPXXXVXLHPS 1134
                  PTP   +P  P P       P+  S  P  +  R   P       PS
Sbjct: 1214 STAPPVPTPSAGLPPVPVPTAKAPPVPAPSSEAPSVSTPRSSVPSPHSNASPS 1266


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,638,884
Number of Sequences: 5004
Number of extensions: 17653
Number of successful extensions: 85
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 75
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 635506058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)