Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP12_F_D23
         (935 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC8C9.17c |spc34||DASH complex subunit Spc34|Schizosaccharomyc...    27   3.8  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    26   6.6  
SPAC26A3.09c |rga2||GTPase activating protein Rga2|Schizosacchar...    26   8.8  

>SPAC8C9.17c |spc34||DASH complex subunit Spc34|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 164

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 12/23 (52%), Positives = 17/23 (73%)
 Frame = -2

Query: 187 NVHLSGIFSLENVVR*RNRQLPQ 119
           N+H+SGI +LENV+  +  QL Q
Sbjct: 103 NLHMSGIENLENVLLEQKEQLQQ 125


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 9/20 (45%), Positives = 9/20 (45%)
 Frame = +2

Query: 731 PPPPXAXAXLPXXXPFPXPP 790
           PPPP      P   P P PP
Sbjct: 734 PPPPAVIVPTPAPAPIPVPP 753


>SPAC26A3.09c |rga2||GTPase activating protein
           Rga2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1275

 Score = 25.8 bits (54), Expect = 8.8
 Identities = 19/64 (29%), Positives = 27/64 (42%), Gaps = 1/64 (1%)
 Frame = -2

Query: 262 PRSQRNRGLRDSHSPARPFEGNTEPNVHLSGIFSLENVVR*RNRQLPQQTTNTNK-TFHC 86
           P    ++GL +S SP  PF  +   N H S     ++    +   LP  T   NK +F  
Sbjct: 521 PGKLSSKGLLNSFSPISPFSKSKSHNHHPSSQVE-KSTSNSKGSMLPLDTLYNNKLSFRL 579

Query: 85  QRSL 74
             SL
Sbjct: 580 DESL 583


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,466,606
Number of Sequences: 5004
Number of extensions: 44628
Number of successful extensions: 122
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 475330268
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)