Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP12_F_D20
         (925 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    27   0.32 
X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor pro...    24   2.2  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   9.0  

>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 26.6 bits (56), Expect = 0.32
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = +2

Query: 770 PPXXXPPPPPPXXPXP 817
           PP   PPPPPP    P
Sbjct: 338 PPKPAPPPPPPSSSGP 353



 Score = 21.8 bits (44), Expect = 9.0
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +3

Query: 768 PPLXXXPPPPP 800
           PP    PPPPP
Sbjct: 338 PPKPAPPPPPP 348


>X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor
           protein.
          Length = 168

 Score = 23.8 bits (49), Expect = 2.2
 Identities = 12/36 (33%), Positives = 12/36 (33%)
 Frame = +1

Query: 814 PXPXXPHPRXXXPPXGXXXXXXXXXPXXPXPXPPXP 921
           P P  PHPR    P              P P PP P
Sbjct: 107 PQPRPPHPRLRREPEAEPGNNRPV--YIPQPRPPHP 140



 Score = 23.8 bits (49), Expect = 2.2
 Identities = 12/36 (33%), Positives = 12/36 (33%)
 Frame = +1

Query: 814 PXPXXPHPRXXXPPXGXXXXXXXXXPXXPXPXPPXP 921
           P P  PHPR    P              P P PP P
Sbjct: 133 PQPRPPHPRLRREPEAEPGNNRPV--YIPQPRPPHP 166


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.8 bits (44), Expect = 9.0
 Identities = 10/32 (31%), Positives = 10/32 (31%)
 Frame = +2

Query: 797 PPXXPXPXXXXXIPXRXPPPXGXXXPXXXXPP 892
           P   P P      P R  PP     P    PP
Sbjct: 21  PGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPP 52


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 180,657
Number of Sequences: 438
Number of extensions: 5953
Number of successful extensions: 19
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 30113811
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)