Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP12_F_D19
         (940 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    28   0.14 
EF013227-1|ABK54581.1|  119|Apis mellifera elongation factor 1-a...    28   0.14 
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    26   0.43 
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               23   4.0  

>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 27.9 bits (59), Expect = 0.14
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = -2

Query: 111 AKLKTKRWRRAGKTVKRQPKSLK 43
           A++K K  RR GKT +  PKS+K
Sbjct: 373 AEIKEKCDRRTGKTTEENPKSIK 395


>EF013227-1|ABK54581.1|  119|Apis mellifera elongation factor
           1-alpha protein.
          Length = 119

 Score = 27.9 bits (59), Expect = 0.14
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = -2

Query: 111 AKLKTKRWRRAGKTVKRQPKSLK 43
           A++K K  RR GKT +  PKS+K
Sbjct: 84  AEIKEKCDRRTGKTTEENPKSIK 106


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 26.2 bits (55), Expect = 0.43
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = -2

Query: 111 AKLKTKRWRRAGKTVKRQPKSLK 43
           A +K K  RR GKT +  PKS+K
Sbjct: 373 ADIKEKCDRRNGKTTEENPKSIK 395


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 23.0 bits (47), Expect = 4.0
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = -2

Query: 111 AKLKTKRWRRAGKTVKRQ 58
           +K K  +WR+ G TVK++
Sbjct: 225 SKTKLSQWRKDGGTVKKK 242


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 133,534
Number of Sequences: 438
Number of extensions: 2348
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 30718506
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)