Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP12_F_D18
         (1187 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    36   0.008
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    33   0.059
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   6.8  

>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 36.3 bits (80), Expect = 0.008
 Identities = 16/44 (36%), Positives = 19/44 (43%)
 Frame = +2

Query: 947  ATTPXXXSRXHXKXTSXPSPPPPXXXXPRPPXXXXXPAXPPTHP 1078
            +T P           S P+PPPP    P PP     PA PP+ P
Sbjct: 1688 STPPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAP 1731


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 309

 Score = 33.5 bits (73), Expect = 0.059
 Identities = 23/72 (31%), Positives = 28/72 (38%), Gaps = 1/72 (1%)
 Frame = +2

Query: 869  PPSXXSGXSPHTXXPHPXRXIXHSSXATTPXXXSRXHXKXTSXPSPPPPXXXXPRPPXXX 1048
            PP+  S   P T  P P   I   S A+ P   S+     +S P P  P      PP   
Sbjct: 130  PPTPQSELRPPTSAP-PRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAP 188

Query: 1049 XXP-AXPPTHPQ 1081
              P A PP  P+
Sbjct: 189  SLPSAVPPMPPK 200


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 574

 Score = 26.6 bits (56), Expect = 6.8
 Identities = 25/105 (23%), Positives = 30/105 (28%), Gaps = 7/105 (6%)
 Frame = +2

Query: 785  AXPSXPXNXXXXAHRPXHPPNXSXXXXXPPSXXSGXSPHTXXPHPXRXIXHSSXATTPXX 964
            A  S P      +  P  PP  +      P   S     +  P P   I   S    P  
Sbjct: 347  AAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGRSAPALPPL 406

Query: 965  XSRXHXKXTSXPSPP------PPXXXXPRPPXXXXX-PAXPPTHP 1078
             +         P+PP      PP      PP      PA PP  P
Sbjct: 407  GNASRTSTPPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPP 451


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,181,241
Number of Sequences: 5004
Number of extensions: 22367
Number of successful extensions: 60
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 54
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 639490422
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)