Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP12_F_D18
(1187 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical ... 31 1.2
U10438-9|AAU87834.1| 616|Caenorhabditis elegans Hypothetical pr... 31 2.1
Z81053-1|CAB02877.1| 385|Caenorhabditis elegans Hypothetical pr... 30 3.7
Z77655-1|CAB01137.1| 393|Caenorhabditis elegans Hypothetical pr... 30 3.7
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 29 4.9
Z12018-1|CAD88219.2| 774|Caenorhabditis elegans Hypothetical pr... 29 4.9
Z11126-8|CAD88221.2| 774|Caenorhabditis elegans Hypothetical pr... 29 4.9
U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical pr... 29 4.9
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 29 4.9
Z54238-1|CAA90992.2| 281|Caenorhabditis elegans Hypothetical pr... 29 6.4
U23515-9|AAP82644.1| 360|Caenorhabditis elegans Hypothetical pr... 29 6.4
U23515-8|AAP82645.1| 362|Caenorhabditis elegans Hypothetical pr... 29 6.4
U88172-5|AAB42260.1| 483|Caenorhabditis elegans Hypothetical pr... 29 8.5
U58755-7|AAB00696.1| 136|Caenorhabditis elegans Hypothetical pr... 29 8.5
U58751-5|AAN84882.1| 781|Caenorhabditis elegans Wasp (actin cyt... 29 8.5
U58751-4|AAN84881.1| 607|Caenorhabditis elegans Wasp (actin cyt... 29 8.5
>AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical
protein F59E12.9 protein.
Length = 1621
Score = 31.5 bits (68), Expect = 1.2
Identities = 14/30 (46%), Positives = 15/30 (50%)
Frame = +2
Query: 989 TSXPSPPPPXXXXPRPPXXXXXPAXPPTHP 1078
+S PSPPPP P PP P PP P
Sbjct: 1333 SSSPSPPPPPPPPP-PPSDDLTPVPPPPPP 1361
>U10438-9|AAU87834.1| 616|Caenorhabditis elegans Hypothetical protein
B0280.13 protein.
Length = 616
Score = 30.7 bits (66), Expect = 2.1
Identities = 25/90 (27%), Positives = 29/90 (32%), Gaps = 9/90 (10%)
Frame = +2
Query: 830 PXHPPNXSXXXXXPPSXXSGXSPHTXXPHPX--RXIXHSSXATTPXXXSRXHXKXTSXPS 1003
P PP PS S P T P P I + S + P S+ P
Sbjct: 445 PSAPPTIKFPISTGPSYSSTTPPTTPKPAPPPPSRIPNPSPSPQPAEVSKSPPPPPPLPP 504
Query: 1004 -------PPPPXXXXPRPPXXXXXPAXPPT 1072
PPPP P PP + PPT
Sbjct: 505 IATPSSVPPPPPPPPPPPPALEQEISGPPT 534
>Z81053-1|CAB02877.1| 385|Caenorhabditis elegans Hypothetical protein
E02A10.2 protein.
Length = 385
Score = 29.9 bits (64), Expect = 3.7
Identities = 13/27 (48%), Positives = 13/27 (48%)
Frame = -3
Query: 1077 GCVGGXAGXXXXXGGRGXXXXGGGGEG 997
GC GG G GG G GGGG G
Sbjct: 121 GCGGGGGGCGGGCGGGGGGGCGGGGGG 147
>Z77655-1|CAB01137.1| 393|Caenorhabditis elegans Hypothetical protein
C56A3.1 protein.
Length = 393
Score = 29.9 bits (64), Expect = 3.7
Identities = 13/27 (48%), Positives = 13/27 (48%)
Frame = -3
Query: 1077 GCVGGXAGXXXXXGGRGXXXXGGGGEG 997
GC GG G GG G GGGG G
Sbjct: 107 GCGGGGGGGCGGGGGGGCGGGGGGGGG 133
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical protein
C08B11.5 protein.
Length = 388
Score = 29.5 bits (63), Expect = 4.9
Identities = 11/24 (45%), Positives = 11/24 (45%)
Frame = +2
Query: 998 PSPPPPXXXXPRPPXXXXXPAXPP 1069
P PPPP P PP P PP
Sbjct: 298 PPPPPPPGRTPGPPGMPGMPPPPP 321
Score = 29.1 bits (62), Expect = 6.4
Identities = 19/68 (27%), Positives = 20/68 (29%)
Frame = +2
Query: 875 SXXSGXSPHTXXPHPXRXIXHSSXATTPXXXSRXHXKXTSXPSPPPPXXXXPRPPXXXXX 1054
S G P P P TP R +S PPPP R P
Sbjct: 254 SGYQGQYPPVPPPPPSVTPMPPPMPPTPGMTPRPPPPPSSGMWPPPPPPPPGRTPGPPGM 313
Query: 1055 PAXPPTHP 1078
P PP P
Sbjct: 314 PGMPPPPP 321
>Z12018-1|CAD88219.2| 774|Caenorhabditis elegans Hypothetical protein
ZK643.8 protein.
Length = 774
Score = 29.5 bits (63), Expect = 4.9
Identities = 13/27 (48%), Positives = 14/27 (51%)
Frame = -3
Query: 1077 GCVGGXAGXXXXXGGRGXXXXGGGGEG 997
GC GG +G GG G GGGG G
Sbjct: 146 GCGGGSSGGCGGGGGGGCGGGGGGGCG 172
>Z11126-8|CAD88221.2| 774|Caenorhabditis elegans Hypothetical protein
ZK643.8 protein.
Length = 774
Score = 29.5 bits (63), Expect = 4.9
Identities = 13/27 (48%), Positives = 14/27 (51%)
Frame = -3
Query: 1077 GCVGGXAGXXXXXGGRGXXXXGGGGEG 997
GC GG +G GG G GGGG G
Sbjct: 146 GCGGGSSGGCGGGGGGGCGGGGGGGCG 172
>U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical protein
R04E5.8a protein.
Length = 997
Score = 29.5 bits (63), Expect = 4.9
Identities = 14/41 (34%), Positives = 14/41 (34%)
Frame = +2
Query: 956 PXXXSRXHXKXTSXPSPPPPXXXXPRPPXXXXXPAXPPTHP 1078
P R S P PPPP PP P PP P
Sbjct: 124 PPPPPRKSRAGGSSPPPPPPPRVPRTPPPRSPPPRRPPMTP 164
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA binding
protein protein.
Length = 398
Score = 29.5 bits (63), Expect = 4.9
Identities = 11/24 (45%), Positives = 11/24 (45%)
Frame = +2
Query: 998 PSPPPPXXXXPRPPXXXXXPAXPP 1069
P PPPP P PP P PP
Sbjct: 308 PPPPPPPGRTPGPPGMPGMPPPPP 331
Score = 29.1 bits (62), Expect = 6.4
Identities = 19/68 (27%), Positives = 20/68 (29%)
Frame = +2
Query: 875 SXXSGXSPHTXXPHPXRXIXHSSXATTPXXXSRXHXKXTSXPSPPPPXXXXPRPPXXXXX 1054
S G P P P TP R +S PPPP R P
Sbjct: 264 SGYQGQYPPVPPPPPSVTPMPPPMPPTPGMTPRPPPPPSSGMWPPPPPPPPGRTPGPPGM 323
Query: 1055 PAXPPTHP 1078
P PP P
Sbjct: 324 PGMPPPPP 331
>Z54238-1|CAA90992.2| 281|Caenorhabditis elegans Hypothetical protein
T28C6.1 protein.
Length = 281
Score = 29.1 bits (62), Expect = 6.4
Identities = 15/42 (35%), Positives = 15/42 (35%)
Frame = -1
Query: 1079 GGVWAAXXGXXXXXGGGXXXXXGGAERGXRWXXXGCEXVGWG 954
GG G GGG GG RG RW GWG
Sbjct: 237 GGGRGGQQGPGGWGGGGRGGGWGGWGRGSRWGWGRPSWGGWG 278
>U23515-9|AAP82644.1| 360|Caenorhabditis elegans Hypothetical protein
R144.4a protein.
Length = 360
Score = 29.1 bits (62), Expect = 6.4
Identities = 15/66 (22%), Positives = 20/66 (30%)
Frame = +2
Query: 872 PSXXSGXSPHTXXPHPXRXIXHSSXATTPXXXSRXHXKXTSXPSPPPPXXXXPRPPXXXX 1051
P + +P P P + + H +S P PPPP P
Sbjct: 113 PPPTASSAPPVPPPAPVPAVEGKKPSIVSSSSFSHHGATSSAPPPPPPPPPVSVPSSKPT 172
Query: 1052 XPAXPP 1069
P PP
Sbjct: 173 PPPPPP 178
>U23515-8|AAP82645.1| 362|Caenorhabditis elegans Hypothetical protein
R144.4b protein.
Length = 362
Score = 29.1 bits (62), Expect = 6.4
Identities = 15/66 (22%), Positives = 20/66 (30%)
Frame = +2
Query: 872 PSXXSGXSPHTXXPHPXRXIXHSSXATTPXXXSRXHXKXTSXPSPPPPXXXXPRPPXXXX 1051
P + +P P P + + H +S P PPPP P
Sbjct: 113 PPPTASSAPPVPPPAPVPAVEGKKPSIVSSSSFSHHGATSSAPPPPPPPPPVSVPSSKPT 172
Query: 1052 XPAXPP 1069
P PP
Sbjct: 173 PPPPPP 178
>U88172-5|AAB42260.1| 483|Caenorhabditis elegans Hypothetical protein
ZK354.8 protein.
Length = 483
Score = 28.7 bits (61), Expect = 8.5
Identities = 12/29 (41%), Positives = 13/29 (44%)
Frame = +2
Query: 992 SXPSPPPPXXXXPRPPXXXXXPAXPPTHP 1078
S P PPPP +PP A PP P
Sbjct: 95 SDPPPPPPPVAPHQPPPQLATSAQPPQPP 123
>U58755-7|AAB00696.1| 136|Caenorhabditis elegans Hypothetical protein
C34D4.11 protein.
Length = 136
Score = 28.7 bits (61), Expect = 8.5
Identities = 12/24 (50%), Positives = 12/24 (50%)
Frame = -3
Query: 1068 GGXAGXXXXXGGRGXXXXGGGGEG 997
GG G GGRG GGGG G
Sbjct: 82 GGNGGGGNGGGGRGGGGGGGGGRG 105
Score = 28.7 bits (61), Expect = 8.5
Identities = 12/24 (50%), Positives = 12/24 (50%)
Frame = -3
Query: 1068 GGXAGXXXXXGGRGXXXXGGGGEG 997
GG G GGRG GGGG G
Sbjct: 99 GGGGGRGGGGGGRGGGGGGGGGRG 122
>U58751-5|AAN84882.1| 781|Caenorhabditis elegans Wasp (actin
cytoskeleton modulator)homolog protein 1, isoform b
protein.
Length = 781
Score = 28.7 bits (61), Expect = 8.5
Identities = 20/84 (23%), Positives = 24/84 (28%)
Frame = +2
Query: 827 RPXHPPNXSXXXXXPPSXXSGXSPHTXXPHPXRXIXHSSXATTPXXXSRXHXKXTSXPSP 1006
RP PP S PS +P+ P P ++ P P
Sbjct: 573 RPPPPPPSSGTRGIAPSRPLPQAPNYGTPENRPHAVPPPPPPPPPQSFGMAPISSAAPPP 632
Query: 1007 PPPXXXXPRPPXXXXXPAXPPTHP 1078
PPP P P PP P
Sbjct: 633 PPPPPPMGLPAVGAGAPPPPPPPP 656
>U58751-4|AAN84881.1| 607|Caenorhabditis elegans Wasp (actin
cytoskeleton modulator)homolog protein 1, isoform a
protein.
Length = 607
Score = 28.7 bits (61), Expect = 8.5
Identities = 20/84 (23%), Positives = 24/84 (28%)
Frame = +2
Query: 827 RPXHPPNXSXXXXXPPSXXSGXSPHTXXPHPXRXIXHSSXATTPXXXSRXHXKXTSXPSP 1006
RP PP S PS +P+ P P ++ P P
Sbjct: 399 RPPPPPPSSGTRGIAPSRPLPQAPNYGTPENRPHAVPPPPPPPPPQSFGMAPISSAAPPP 458
Query: 1007 PPPXXXXPRPPXXXXXPAXPPTHP 1078
PPP P P PP P
Sbjct: 459 PPPPPPMGLPAVGAGAPPPPPPPP 482
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,151,503
Number of Sequences: 27780
Number of extensions: 169049
Number of successful extensions: 1084
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 504
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 916
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3255550896
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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