Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP12_F_D17
(897 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_06_0610 - 25449085-25453284 29 3.8
11_01_0687 - 5651002-5651453,5651535-5651951,5652621-5653338,565... 29 3.8
10_08_0095 + 14760292-14760624,14760689-14761000,14761768-147624... 29 3.8
05_07_0332 - 29332520-29332818,29333511-29333725,29334380-293344... 29 5.0
10_08_0226 - 16001958-16002527 29 6.6
09_02_0181 - 5425833-5426527,5426667-5429397 29 6.6
11_06_0143 + 20589574-20589684,20590256-20590873,20590943-205910... 28 8.8
09_03_0007 - 11430123-11430513,11430605-11430794,11431114-114311... 28 8.8
05_03_0164 - 9078814-9079908 28 8.8
>11_06_0610 - 25449085-25453284
Length = 1399
Score = 29.5 bits (63), Expect = 3.8
Identities = 24/48 (50%), Positives = 29/48 (60%)
Frame = -1
Query: 366 KTLVP*A*PVSLPRSSLKISLL*PAFPKSPSSFCPKVPKTLPPPICLS 223
K+L P A PVSLP +K SL P P +P S P V K+LPPP +S
Sbjct: 1262 KSLPPPA-PVSLPPPPVK-SL--P--PPAPVSLPPPVVKSLPPPAPVS 1303
>11_01_0687 -
5651002-5651453,5651535-5651951,5652621-5653338,
5654106-5654417,5654482-5654814
Length = 743
Score = 29.5 bits (63), Expect = 3.8
Identities = 27/72 (37%), Positives = 29/72 (40%), Gaps = 3/72 (4%)
Frame = +2
Query: 194 SRRHPRDVTWDKQMGGGKVFGTLGQNDDGLFGKAGYNREIFNDDRGKLTG-QAYGTRVLG 370
SR H TW KQ GGK G G G G G R + TG Q YG V
Sbjct: 387 SRSHYIVQTWQKQF-GGKGAGGQGGGQPGYEGGTGQQR--YGVGAPPPTGQQGYGGGVPP 443
Query: 371 P--GGDSTNYGG 400
P G T +GG
Sbjct: 444 PTCSGGHTGFGG 455
>10_08_0095 +
14760292-14760624,14760689-14761000,14761768-14762489,
14762905-14763187,14763419-14763650,14763736-14764187
Length = 777
Score = 29.5 bits (63), Expect = 3.8
Identities = 27/72 (37%), Positives = 29/72 (40%), Gaps = 3/72 (4%)
Frame = +2
Query: 194 SRRHPRDVTWDKQMGGGKVFGTLGQNDDGLFGKAGYNREIFNDDRGKLTG-QAYGTRVLG 370
SR H TW KQ GGK G G G G G R + TG Q YG V
Sbjct: 387 SRSHYIVQTWQKQF-GGKGAGGQGGGQPGYEGGTGQQR--YGVGAPPPTGQQGYGGGVPP 443
Query: 371 P--GGDSTNYGG 400
P G T +GG
Sbjct: 444 PTCSGGHTGFGG 455
>05_07_0332 - 29332520-29332818,29333511-29333725,29334380-29334408,
29334956-29335045,29335120-29335155,29335222-29336553,
29337331-29337497,29337519-29337724,29337815-29338036,
29338332-29338381,29338754-29338870,29339471-29339551,
29339656-29339694,29340464-29340636,29340769-29340826,
29340934-29340987,29341066-29341613,29341695-29341755,
29342180-29342260,29342448-29342630,29342908-29343162,
29343304-29343423,29343497-29344901,29344988-29345085,
29345164-29345218,29345307-29345366,29346498-29346697
Length = 2077
Score = 29.1 bits (62), Expect = 5.0
Identities = 10/25 (40%), Positives = 18/25 (72%)
Frame = +2
Query: 383 STNYGGRLDWANKNAQATIDLNRQI 457
S+ +GG L W N + ++T+D +RQ+
Sbjct: 960 SSLHGGSLPWKNTDFESTVDFDRQL 984
>10_08_0226 - 16001958-16002527
Length = 189
Score = 28.7 bits (61), Expect = 6.6
Identities = 27/90 (30%), Positives = 36/90 (40%), Gaps = 4/90 (4%)
Frame = +2
Query: 236 GGGKVFGTLGQNDDGLFGKAGYNREIFNDDRGKLTGQA-YGTRVLGPGGDSTNYGGRLDW 412
G G G++ Q G G + G + G YGT G + GG
Sbjct: 91 GQGSSSGSVSQGG-GSASAGGGGGGVAGGQAGGVDGSGGYGTGTGSGTGSAAADGGASPT 149
Query: 413 ANK---NAQATIDLNRQIGGRSGMTASGSG 493
++ NA AT D N GG+SG + SG G
Sbjct: 150 SSPPYANANATGDGNGNGGGQSGGSGSGGG 179
>09_02_0181 - 5425833-5426527,5426667-5429397
Length = 1141
Score = 28.7 bits (61), Expect = 6.6
Identities = 19/72 (26%), Positives = 28/72 (38%), Gaps = 1/72 (1%)
Frame = +2
Query: 188 QSSRRHPRDVTWDKQMGGGKVFGTLGQN-DDGLFGKAGYNREIFNDDRGKLTGQAYGTRV 364
QS RR + W K++GG + +N DDG G + G + T
Sbjct: 959 QSRRRAEKAAAWPKRLGGTGPCASRTENADDGAAGGGDGGSTWGGGSGAPMAGSGFPTHG 1018
Query: 365 LGPGGDSTNYGG 400
G G+ + GG
Sbjct: 1019 SGRRGERRDGGG 1030
>11_06_0143 +
20589574-20589684,20590256-20590873,20590943-20591010,
20591159-20591234,20591311-20591372,20591452-20591603,
20591889-20592052,20592129-20592317,20592417-20592538,
20592620-20592827,20593238-20593291,20593457-20593626,
20594265-20594355,20595405-20595529,20596372-20596444,
20596822-20596914,20597482-20597728,20598305-20598364,
20598461-20598590,20599008-20599014
Length = 939
Score = 28.3 bits (60), Expect = 8.8
Identities = 22/64 (34%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
Frame = +2
Query: 236 GGGKVFG-TLGQNDDGLFGKAGYNREIFNDDRGKLTGQAYGTRVLGPGGDS-TNYGGRLD 409
G G G T+G +DDG K + + + G+ G A G R G GG N+G R D
Sbjct: 177 GAGAAHGKTIGLDDDGEEDKMDEDAKTPSKAAGRGRGGASGGRGRGGGGRGFMNFGERKD 236
Query: 410 WANK 421
+K
Sbjct: 237 PPHK 240
>09_03_0007 -
11430123-11430513,11430605-11430794,11431114-11431182,
11431601-11431727,11431843-11432083,11432519-11432596,
11433004-11433109,11433560-11433625,11437021-11437043,
11438106-11438177,11438256-11438394,11439505-11439919
Length = 638
Score = 28.3 bits (60), Expect = 8.8
Identities = 25/90 (27%), Positives = 36/90 (40%), Gaps = 3/90 (3%)
Frame = +2
Query: 152 PSDYAEDYSISGQSSRRHPRDVTWDKQMGGGKVFGTLGQNDDGLFGKAGYNREIFNDDRG 331
PS +A D I +S PR ++ D + + G + N L N + N G
Sbjct: 162 PSQFAWDGVICRNTSDNIPRIISLD--LSNSNLHGVISNNFTLLTALENLNNFVPNIAVG 219
Query: 332 KLTGQ---AYGTRVLGPGGDSTNYGGRLDW 412
K+ + G GGDS N +LDW
Sbjct: 220 KVKKDDMVSKGEVKKVKGGDSQNLDEKLDW 249
>05_03_0164 - 9078814-9079908
Length = 364
Score = 28.3 bits (60), Expect = 8.8
Identities = 19/73 (26%), Positives = 33/73 (45%), Gaps = 2/73 (2%)
Frame = +2
Query: 362 VLGPGGDSTNYGGRLDWANKNAQATIDLNRQIGGRSGMTASGSGVWDLDKNTHFSAGGMV 541
V+G G +++ LD+ + A A + NR+ G ++ G + L N H S G
Sbjct: 85 VVGDAGATSDGLLLLDFTDIRATARVVANRRAGAQAQAQQQGKKLTGLSFNLHNSRGDTQ 144
Query: 542 SKEFG--HKRPDV 574
+E + PD+
Sbjct: 145 ERELAGVNTNPDI 157
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,745,072
Number of Sequences: 37544
Number of extensions: 483493
Number of successful extensions: 1410
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1356
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1406
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2530383840
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -