Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP12_F_D17
(897 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 30 2.6
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 30 2.6
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 30 2.6
Z69383-1|CAA93412.1| 409|Caenorhabditis elegans Hypothetical pr... 29 3.4
AF078789-1|AAK21515.1| 392|Caenorhabditis elegans Hypothetical ... 29 6.0
AF039720-9|AAK68360.2| 676|Caenorhabditis elegans Hypothetical ... 29 6.0
AF000193-3|AAB52890.1| 259|Caenorhabditis elegans Hypothetical ... 29 6.0
Z93387-2|CAB07650.1| 763|Caenorhabditis elegans Hypothetical pr... 28 7.9
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 29.9 bits (64), Expect = 2.6
Identities = 20/51 (39%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Frame = +2
Query: 344 QAYGTRVLGP-GGDSTNYGGRLDWANKNAQATIDLNRQIGGRSGMTASGSG 493
Q +G G GG+ N GG +N Q T + N GG G+TASG G
Sbjct: 160 QGFGNNQQGGFGGNQGNQGGFGGQNGQNGQNTGN-NGGFGGNQGVTASGFG 209
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 29.9 bits (64), Expect = 2.6
Identities = 20/51 (39%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Frame = +2
Query: 344 QAYGTRVLGP-GGDSTNYGGRLDWANKNAQATIDLNRQIGGRSGMTASGSG 493
Q +G G GG+ N GG +N Q T + N GG G+TASG G
Sbjct: 181 QGFGNNQQGGFGGNQGNQGGFGGQNGQNGQNTGN-NGGFGGNQGVTASGFG 230
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 29.9 bits (64), Expect = 2.6
Identities = 20/51 (39%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Frame = +2
Query: 344 QAYGTRVLGP-GGDSTNYGGRLDWANKNAQATIDLNRQIGGRSGMTASGSG 493
Q +G G GG+ N GG +N Q T + N GG G+TASG G
Sbjct: 166 QGFGNNQQGGFGGNQGNQGGFGGQNGQNGQNTGN-NGGFGGNQGVTASGFG 215
>Z69383-1|CAA93412.1| 409|Caenorhabditis elegans Hypothetical
protein F13E9.4 protein.
Length = 409
Score = 29.5 bits (63), Expect = 3.4
Identities = 33/116 (28%), Positives = 44/116 (37%), Gaps = 2/116 (1%)
Frame = +2
Query: 149 GPSDYAEDYSISGQSSRRHPRDVTWDKQMGGGKVFGTLGQNDDGLFG--KAGYNREIFND 322
G + +S GQ S + + +T + G GQN + G + GY
Sbjct: 32 GYGQQQQGFSGFGQGSATNRQGMTGQGLLESSYQQG-YGQNQGSMQGYSQQGYGGNS-QQ 89
Query: 323 DRGKLTGQAYGTRVLGPGGDSTNYGGRLDWANKNAQATIDLNRQIGGRSGMTASGS 490
D G Q G V G GG S +YG + + Q N G SG ASGS
Sbjct: 90 DYGYSQSQGSGMGVQGYGGSSQSYGQQAFAQQQRPQQGFQSN----GFSGQQASGS 141
>AF078789-1|AAK21515.1| 392|Caenorhabditis elegans Hypothetical
protein Y44E3B.2 protein.
Length = 392
Score = 28.7 bits (61), Expect = 6.0
Identities = 16/36 (44%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Frame = -1
Query: 282 SPSSFCPKVPKTLPPPICLSQVTSRG-CR-LEDCPL 181
SP FC P PP C+S+V G CR ED P+
Sbjct: 321 SPYLFCYIPPNNEHPPSCVSKVRRNGVCRGFEDYPI 356
>AF039720-9|AAK68360.2| 676|Caenorhabditis elegans Hypothetical
protein F33D11.9b protein.
Length = 676
Score = 28.7 bits (61), Expect = 6.0
Identities = 15/57 (26%), Positives = 29/57 (50%)
Frame = -2
Query: 308 LCCNQLFQRVHHRFVPKCQRPCLPPFVCPK*RHEGVALRIAR*SSNLPRNQKVRKLL 138
L LF V+ + +P V PK G+A+++ R S+LP+++ ++L+
Sbjct: 53 LSAQWLFDPVNMEVTRISEHSLMPGLVTPKFDKSGIAIQLYRRFSDLPKSKSQQELI 109
>AF000193-3|AAB52890.1| 259|Caenorhabditis elegans Hypothetical
protein T20B6.3 protein.
Length = 259
Score = 28.7 bits (61), Expect = 6.0
Identities = 19/55 (34%), Positives = 23/55 (41%)
Frame = +2
Query: 236 GGGKVFGTLGQNDDGLFGKAGYNREIFNDDRGKLTGQAYGTRVLGPGGDSTNYGG 400
GGG G G DG +G G+ G + G YG +G GG YGG
Sbjct: 167 GGGMGGGGYGGGGDGGYGGGGFGGGGMGGYGGGMGGGGYGGGGMGGGG----YGG 217
>Z93387-2|CAB07650.1| 763|Caenorhabditis elegans Hypothetical
protein T02E9.3 protein.
Length = 763
Score = 28.3 bits (60), Expect = 7.9
Identities = 26/104 (25%), Positives = 45/104 (43%), Gaps = 1/104 (0%)
Frame = +2
Query: 377 GDSTNYGGRLDWANKNAQATID-LNRQIGGRSGMTASGSGVWDLDKNTHFSAGGMVSKEF 553
G T+ GG + + + I+ + + G R T S SG T +GG SKE
Sbjct: 213 GQLTHRGGERERRHSLPRVIIEEVRSRRGSRMSQTGSQSG-----SPTRRQSGG--SKER 265
Query: 554 GHKRPDVGLQAEIRHDW*SPQHLNNNLLPNKLVFFNYSI*VIID 685
+PD+ + A+ + W SP L ++L+ + ++ D
Sbjct: 266 SPSQPDIHIVAKPQQRWRSPTICAETLAHDRLLAAKKRVSIVPD 309
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,546,843
Number of Sequences: 27780
Number of extensions: 391501
Number of successful extensions: 1123
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1021
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1123
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2276333906
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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