Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP12_F_D15
         (884 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3H1.01c |orp3|orc3, SPAP14E8.06c|origin recognition complex ...    29   1.2  
SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||M...    27   3.6  
SPBC32H8.08c |||mannosyltransferase complex subunit |Schizosacch...    27   3.6  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    26   6.2  
SPAC821.04c |cid13||poly|Schizosaccharomyces pombe|chr 1|||Manual      26   8.2  

>SPAC3H1.01c |orp3|orc3, SPAP14E8.06c|origin recognition complex
           subunit Orp3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 690

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
 Frame = +2

Query: 434 GCDYSL-NMKPDIQSSEARLRSFALSKLEKYHFHKAHCAEALEIAAESVEKSLXILF 601
           GC Y++ N+K  ++  +  L S  LS ++   F+     E LE    S+E+SL + F
Sbjct: 199 GCLYTIFNLKIPLEMFDTSLDSKFLSNVKTKVFNMKASTEILESLFTSIEESLSLKF 255


>SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1052

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 14/46 (30%), Positives = 24/46 (52%)
 Frame = +2

Query: 548  EALEIAAESVEKSLXILFYKYFKIDPEDXPENTLSXSELXEMRMDD 685
            E ++ A E+++ S  I   +   +D E   EN++   E+ E R DD
Sbjct: 878  ELIDEAEENIDISQDISMTETNAVDDEVQAENSILQDEVEETRQDD 923


>SPBC32H8.08c |||mannosyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 438

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = +2

Query: 137 HRNMDNQSKQLAEDFFLREPVDARIRKVKDEPKEESHPTL 256
           H+ + N        FFL +  + RI+K+K+E K++ +  L
Sbjct: 273 HQKISNLPTTDLWSFFLDKRYETRIKKLKEEQKDQGYYVL 312


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 13/30 (43%), Positives = 14/30 (46%)
 Frame = -2

Query: 406  HPIPVSQI*TFILVKTSTAQFEFRTMDIPQ 317
            HP P  QI T  +   ST    F T  IPQ
Sbjct: 1311 HPQPTKQIPTAAVKDPSTTSTSFNTAPIPQ 1340


>SPAC821.04c |cid13||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 578

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -3

Query: 300 FCESGFKRIVCISTLRV 250
           F  +G K++VCIST +V
Sbjct: 133 FARNGLKKVVCISTAKV 149


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,942,091
Number of Sequences: 5004
Number of extensions: 55713
Number of successful extensions: 160
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 444486180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)