Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP12_F_D13
         (867 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0487 - 3591171-3592313,3593522-3593800,3594688-3595008           33   0.22 
03_06_0471 + 34169562-34169892,34170121-34170347                       31   0.90 
02_04_0382 - 22501041-22501279,22501717-22501810                       29   6.4  
08_02_1289 - 25923916-25924586,25925148-25926630                       28   8.4  
06_03_0874 - 25580417-25580419,25580504-25580604,25580828-255814...    28   8.4  
05_05_0153 - 22766805-22767023,22767662-22767940,22768294-227684...    28   8.4  

>01_01_0487 - 3591171-3592313,3593522-3593800,3594688-3595008
          Length = 580

 Score = 33.5 bits (73), Expect = 0.22
 Identities = 23/63 (36%), Positives = 27/63 (42%), Gaps = 3/63 (4%)
 Frame = +1

Query: 196 QPTVGNGYEPIDNRPYIVNPPKDYNPNGNGYEPI---DNGAYYVDRPQGRPYFKPTPFPG 366
           QP     Y P  + P  V PP  Y P  +G  P     N + Y + P GRP   P P  G
Sbjct: 387 QPEEAMSYAPPQSYPPNVRPPSPYMPPPSGPAPPFYGQNQSMY-EPPVGRPNSGPPPSYG 445

Query: 367 ARG 375
           A G
Sbjct: 446 AGG 448


>03_06_0471 + 34169562-34169892,34170121-34170347
          Length = 185

 Score = 31.5 bits (68), Expect = 0.90
 Identities = 17/50 (34%), Positives = 21/50 (42%)
 Frame = +1

Query: 217 YEPIDNRPYIVNPPKDYNPNGNGYEPIDNGAYYVDRPQGRPYFKPTPFPG 366
           Y P    P    PP  Y P+  GY P   GAY       +P + P  +PG
Sbjct: 56  YPPAGGYPGAQYPPSGYPPSQGGYPP---GAYPPSGYPQQPGYPPAGYPG 102


>02_04_0382 - 22501041-22501279,22501717-22501810
          Length = 110

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 4/66 (6%)
 Frame = +1

Query: 193 AQPTVGNGYEPIDNRPYIVNPPK----DYNPNGNGYEPIDNGAYYVDRPQGRPYFKPTPF 360
           A+ T  +G  P ++  +   PP     D  P+ + Y+P  +  YY D P    Y+ P P 
Sbjct: 28  AEQTHDDGDNPPESPDHEDPPPSPEYYDPPPSPDYYDPPHSPDYY-DPPPSPDYYDPPPS 86

Query: 361 PGARGG 378
           P   GG
Sbjct: 87  PYYGGG 92


>08_02_1289 - 25923916-25924586,25925148-25926630
          Length = 717

 Score = 28.3 bits (60), Expect = 8.4
 Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
 Frame = -1

Query: 489 ALQYVYLXIPLT*I---HMKF*NILLIHYFVINFLRYSLLPTASTRERGRLEV 340
           ALQY+Y  +P+  +   H+K  NILL   F      YSL+P  +     +L V
Sbjct: 519 ALQYLYDELPMLTVPHGHLKSSNILLNDRFEPLLTDYSLVPVMNQSHSAQLMV 571


>06_03_0874 -
           25580417-25580419,25580504-25580604,25580828-25581411,
           25581523-25581594,25581667-25581793,25583412-25583516,
           25583643-25583676
          Length = 341

 Score = 28.3 bits (60), Expect = 8.4
 Identities = 18/51 (35%), Positives = 23/51 (45%)
 Frame = +1

Query: 208 GNGYEPIDNRPYIVNPPKDYNPNGNGYEPIDNGAYYVDRPQGRPYFKPTPF 360
           G  Y+P   R     PP+   P    Y P   G  Y  +PQG+PY  P P+
Sbjct: 247 GETYQPQPQRE--TYPPQ---PQVQPYPPKPQGQPYPPQPQGQPY-PPQPY 291


>05_05_0153 -
           22766805-22767023,22767662-22767940,22768294-22768401,
           22768500-22768779,22768871-22769174,22769367-22769975,
           22770186-22770411
          Length = 674

 Score = 28.3 bits (60), Expect = 8.4
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -1

Query: 105 HEEFHFYMITSYHRRKY*SCQNLKEFPIV 19
           HEE+  + +  +HR+     +  KEFPIV
Sbjct: 364 HEEYEVFELRIFHRKNRTGFEENKEFPIV 392


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,587,756
Number of Sequences: 37544
Number of extensions: 314435
Number of successful extensions: 803
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 725
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 796
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2432722788
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)