Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP12_F_D12
(911 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0686 - 30900748-30902167,30903442-30904742 38 0.008
12_02_1174 - 26696869-26698191 34 0.18
04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,943... 29 3.9
12_02_0299 - 17051570-17052474,17053542-17053755 29 6.8
08_01_0375 - 3307206-3307316,3307870-3307965,3308061-3308132,330... 29 6.8
07_03_0560 + 19479597-19480667 29 6.8
05_03_0458 + 14280953-14281866,14281964-14282912 29 6.8
10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,121... 28 9.0
07_03_1751 - 29215074-29216270 28 9.0
>02_05_0686 - 30900748-30902167,30903442-30904742
Length = 906
Score = 38.3 bits (85), Expect = 0.008
Identities = 34/145 (23%), Positives = 40/145 (27%)
Frame = +1
Query: 475 PPS*TXMXXXXXLRAXXPTPAXGVXXXPXXPGPNXXXTX*PXXSQXXQXXKTGXIPGVFP 654
PPS + + P+PA P P P+ Q + P
Sbjct: 254 PPSTPAITAVSSVPRSSPSPAPAPAARPASPSPSLPLPPGRESPSRPQSIAAAAVASPAP 313
Query: 655 WXLPPGXSCKXPXXIPXVXPPXPFXXPGXSPXXPPPXXXXXXXXXXXXXXXXXXSGXPXP 834
PP P PP P P +P PPP G P P
Sbjct: 314 PPPPP------PKPAAAAPPPPP--PPKAAPPPPPPKGPPPPPPAKGPPPPPPPKG-PSP 364
Query: 835 XPXPXPXGLXSGXXXPPXXGXXPHP 909
P P P G G PP G P
Sbjct: 365 PPPPPPGGKKGGPPPPPPKGGASRP 389
>12_02_1174 - 26696869-26698191
Length = 440
Score = 33.9 bits (74), Expect = 0.18
Identities = 29/117 (24%), Positives = 36/117 (30%), Gaps = 4/117 (3%)
Frame = +1
Query: 424 SANPRAKAVXXLXPXPXPP----S*TXMXXXXXLRAXXPTPAXGVXXXPXXPGPNXXXTX 591
+ +P K L P P PP + T + P P + P P P
Sbjct: 108 ATSPEFKTPPALSPVPPPPPPPRTRTRVEPPHRPPPVKPQPPPSLPPPPPPPPPPPPPRP 167
Query: 592 *PXXSQXXQXXKTGXIPGVFPWXLPPGXSCKXPXXIPXVXPPXPFXXPGXSPXXPPP 762
P K P + P PP + P P V P P P P PPP
Sbjct: 168 -PSVKPPVVQPKPQPPPSLQPPSPPPPPPTRPPSVKPPVVQPKPQPPPTLPPPSPPP 223
Score = 29.5 bits (63), Expect = 3.9
Identities = 21/73 (28%), Positives = 23/73 (31%), Gaps = 1/73 (1%)
Frame = +1
Query: 631 GXIPGVF-PWXLPPGXSCKXPXXIPXVXPPXPFXXPGXSPXXPPPXXXXXXXXXXXXXXX 807
G P V P PP + P +P V P P P SP PPP
Sbjct: 234 GDTPAVVEPKPQPPPPPPRAPVKMPRVLEPKP-SPPPPSPLPPPPEDYWSPTAVTPPEPT 292
Query: 808 XXXSGXPXPXPXP 846
P P P P
Sbjct: 293 KPKPPPPSPPPPP 305
>04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,
9435445-9435526,9435610-9435660,9435749-9435829,
9435965-9436006,9436117-9436215,9438130-9438201,
9438557-9438680,9438850-9439723,9440274-9440456,
9440941-9442741,9442825-9443049,9443117-9443814,
9444519-9444591
Length = 1541
Score = 29.5 bits (63), Expect = 3.9
Identities = 21/74 (28%), Positives = 21/74 (28%)
Frame = +1
Query: 688 PXXIPXVXPPXPFXXPGXSPXXPPPXXXXXXXXXXXXXXXXXXSGXPXPXPXPXPXGLXS 867
P I V PP P G P PPP G P P P G
Sbjct: 1142 PEGIGGVPPPPPVGGLGGPPAPPPP-----AGFRGGTPPPNAHGGVAPPPPPPRGHGGVG 1196
Query: 868 GXXXPPXXGXXPHP 909
G PP P P
Sbjct: 1197 GPPTPPGAPAPPMP 1210
>12_02_0299 - 17051570-17052474,17053542-17053755
Length = 372
Score = 28.7 bits (61), Expect = 6.8
Identities = 15/38 (39%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
Frame = +1
Query: 652 PWXLP-PGXSCKXPXXIPXVXPPXPFXXPGXSPXXPPP 762
PW P P + P +P PP PF P P PPP
Sbjct: 224 PWFPPIPFLTPPPPPFLPFPLPPIPFLTP---PSPPPP 258
>08_01_0375 -
3307206-3307316,3307870-3307965,3308061-3308132,
3308247-3308315,3308427-3308513,3308753-3308858,
3309118-3309237,3309327-3309406,3309497-3309878,
3310746-3310814,3311460-3312202
Length = 644
Score = 28.7 bits (61), Expect = 6.8
Identities = 24/90 (26%), Positives = 24/90 (26%), Gaps = 4/90 (4%)
Frame = +1
Query: 652 PWXLPPGXSCKXPXXIPXVXPPX-PFXXPGXSPXX---PPPXXXXXXXXXXXXXXXXXXS 819
P PP P P PP P G P PPP S
Sbjct: 44 PQGAPPPFLAPPPPPPPGPPPPHQPQFNFGPGPPQQQQPPPPPQMYYQPPPPPPPYGVNS 103
Query: 820 GXPXPXPXPXPXGLXSGXXXPPXXGXXPHP 909
P P P P P S PP P P
Sbjct: 104 SQPPPPPPPPPSPPPSAPPPPPPPPTQPPP 133
>07_03_0560 + 19479597-19480667
Length = 356
Score = 28.7 bits (61), Expect = 6.8
Identities = 24/99 (24%), Positives = 26/99 (26%)
Frame = -2
Query: 910 GGGXXXXXGXXXPXXXGXXRXGVXGRXXXXRRXXGDXGXXERAGGXXGXTGGVXXGXARX 731
GGG G G G G G G GG G GG G
Sbjct: 244 GGGGGGMGGGGGGGMGGGAGGGFGGGAGGGAGQGGSGGLGGGGGGGLGGGGGAGGGLGGG 303
Query: 730 XKREXGGPXXVXXQXXYRXXXGGGXXGKRXEXGXSXGFG 614
G + + GGG G G GFG
Sbjct: 304 AGGGLGHGGGLGGGLGHGGGLGGGGFGVGVGVGVGVGFG 342
>05_03_0458 + 14280953-14281866,14281964-14282912
Length = 620
Score = 28.7 bits (61), Expect = 6.8
Identities = 15/51 (29%), Positives = 15/51 (29%)
Frame = +1
Query: 733 PGXSPXXPPPXXXXXXXXXXXXXXXXXXSGXPXPXPXPXPXGLXSGXXXPP 885
P SP PPP S P P P P P S PP
Sbjct: 58 PSSSPSSPPPLPPLQPTPPPLPPTTLSCSSHPTPPPPPSPTTSPSASSLPP 108
>10_01_0100 +
1209424-1209538,1210373-1211073,1211158-1211379,
1211452-1211878,1212091-1213219,1213623-1213746,
1214207-1214278,1215480-1215578,1215617-1215640,
1215704-1215745,1215815-1215895,1215983-1216114,
1216115-1216196,1216271-1216365,1218499-1218570,
1218676-1218792,1219379-1219447,1219521-1219587,
1219886-1220025
Length = 1269
Score = 28.3 bits (60), Expect = 9.0
Identities = 19/73 (26%), Positives = 20/73 (27%)
Frame = +1
Query: 667 PGXSCKXPXXIPXVXPPXPFXXPGXSPXXPPPXXXXXXXXXXXXXXXXXXSGXPXPXPXP 846
P + P P PP P SP PPP P P P P
Sbjct: 537 PSPTAAAPPPPPPPPPPPSGNKPAFSPPPPPP---PPPPPPLPQSNYASSQPPPPPPPPP 593
Query: 847 XPXGLXSGXXXPP 885
P L PP
Sbjct: 594 LPNCLVPSPPPPP 606
>07_03_1751 - 29215074-29216270
Length = 398
Score = 28.3 bits (60), Expect = 9.0
Identities = 26/99 (26%), Positives = 28/99 (28%), Gaps = 1/99 (1%)
Frame = -2
Query: 907 GGXXXXXGXXXPXXXGXXRXGVXGRXXXXRRXXGDXGXXERAGGXXGXTGGVXXGXARXX 728
GG G G G G G G AGG G GG+ G
Sbjct: 32 GGGGGFGGGGGVGHGGGVGIGFGGGKGGGVGVGGGGGFGGGAGGGLGHGGGIGGGFGGGK 91
Query: 727 KREXGGPXXVXXQXXYRXXXGGG-XXGKRXEXGXSXGFG 614
GG V + GGG GK G G G
Sbjct: 92 GGGLGGGVGVGGGIGHGGGVGGGFGGGKGGGLGGGGGLG 130
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,555,688
Number of Sequences: 37544
Number of extensions: 251643
Number of successful extensions: 715
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 413
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 625
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2588957540
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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