Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP12_F_D06
(898 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 226 4e-60
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 125 7e-30
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 102 6e-23
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 74 2e-14
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 65 1e-11
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 63 4e-11
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 58 2e-09
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr... 31 0.22
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 30 0.51
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 28 1.6
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos... 28 1.6
SPCC622.02 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual 27 3.6
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 27 4.8
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 26 6.3
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S... 26 8.4
SPBC1A4.10c |pmc1|SPBP23A10.01c, med14|mediator complex subunit ... 26 8.4
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 26 8.4
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 226 bits (552), Expect = 4e-60
Identities = 100/107 (93%), Positives = 104/107 (97%)
Frame = +3
Query: 165 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 344
+EE+AALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRH G+MVGMGQKDSYVGDEAQSK
Sbjct: 2 EEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGIMVGMGQKDSYVGDEAQSK 61
Query: 345 RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEA 485
RGILTLKYPIEHGIV NWDDMEKIWHHTFYNELRVAPEEHP LLTEA
Sbjct: 62 RGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPCLLTEA 108
Score = 72.5 bits (170), Expect = 7e-14
Identities = 34/43 (79%), Positives = 36/43 (83%)
Frame = +1
Query: 487 PLNPKANREXMTQIMFETFXTPAMYVXIXAVLSLYASGRTXGI 615
PLNPK+NRE MTQI+FETF PA YV I AVLSLYASGRT GI
Sbjct: 109 PLNPKSNREKMTQIIFETFNAPAFYVAIQAVLSLYASGRTTGI 151
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 125 bits (302), Expect = 7e-30
Identities = 55/101 (54%), Positives = 74/101 (73%), Gaps = 1/101 (0%)
Frame = +3
Query: 183 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTL 362
+ +DNGSG KAGFAGDD P+ +FP+ VGR +H+ VM QKD +VG EAQ+ RG+L +
Sbjct: 12 ICIDNGSGFIKAGFAGDDIPKCLFPTCVGRIKHERVMPSSIQKDMFVGSEAQNLRGLLKI 71
Query: 363 KYPIEHGIVTNWDDMEKIWHHTFYN-ELRVAPEEHPVLLTE 482
+ PIE GI+ NW DME+IW + + + +L PEEHP+LLTE
Sbjct: 72 QRPIERGIIQNWSDMEEIWSYIYSDQQLNTLPEEHPLLLTE 112
Score = 38.3 bits (85), Expect = 0.001
Identities = 18/43 (41%), Positives = 25/43 (58%)
Frame = +1
Query: 487 PLNPKANREXMTQIMFETFXTPAMYVXIXAVLSLYASGRTXGI 615
PL N+E + + +ET PA+ + VL+LYAS RT GI
Sbjct: 114 PLANIRNKEKIAEYFYETLNVPALSFSLQPVLALYASARTTGI 156
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 102 bits (245), Expect = 6e-23
Identities = 47/106 (44%), Positives = 73/106 (68%), Gaps = 2/106 (1%)
Frame = +3
Query: 171 EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP--RHQGVMVGMGQKDSYVGDEAQSK 344
E A +V+DNG+G K G+A D+ PR FPSIVGRP R + + KD VGDEA++
Sbjct: 2 ESAPIVLDNGTGFVKVGYAKDNFPRFQFPSIVGRPILRAEEKTGNVQIKDVMVGDEAEAV 61
Query: 345 RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTE 482
R +L +KYP+E+GI+ ++++M ++W +TF+ +L++ P +LLTE
Sbjct: 62 RSLLQVKYPMENGIIRDFEEMNQLWDYTFFEKLKIDPRGRKILLTE 107
Score = 51.6 bits (118), Expect = 1e-07
Identities = 25/54 (46%), Positives = 32/54 (59%)
Frame = +1
Query: 454 PRNTQSCSLRLPLNPKANREXMTQIMFETFXTPAMYVXIXAVLSLYASGRTXGI 615
PR + P+NP ANRE M + MFE + +YV I AVLSLYA G + G+
Sbjct: 98 PRGRKILLTEPPMNPVANREKMCETMFERYGFGGVYVAIQAVLSLYAQGLSSGV 151
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 74.1 bits (174), Expect = 2e-14
Identities = 44/124 (35%), Positives = 63/124 (50%), Gaps = 24/124 (19%)
Frame = +3
Query: 183 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVG---------MGQK-------- 311
+++DNG+G K G+AG+DAP VFP+++ R G G M K
Sbjct: 8 IIMDNGTGYSKLGYAGNDAPSYVFPTVIAT-RSAGASSGPAVSSKPSYMASKGSGHLSSK 66
Query: 312 ------DSYVGDEAQSKRGI-LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPV 470
D ++G++A K +L YPI HG + NWD ME+ W + + LR PE+H
Sbjct: 67 RATEDLDFFIGNDALKKASAGYSLDYPIRHGQIENWDHMERFWQQSLFKYLRCEPEDHYF 126
Query: 471 LLTE 482
LLTE
Sbjct: 127 LLTE 130
Score = 43.6 bits (98), Expect = 4e-05
Identities = 19/37 (51%), Positives = 25/37 (67%)
Frame = +1
Query: 487 PLNPKANREXMTQIMFETFXTPAMYVXIXAVLSLYAS 597
PLNP NRE +IMFE+F +Y+ + AVL+L AS
Sbjct: 132 PLNPPENRENTAEIMFESFNCAGLYIAVQAVLALAAS 168
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 65.3 bits (152), Expect = 1e-11
Identities = 36/105 (34%), Positives = 57/105 (54%)
Frame = +3
Query: 168 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKR 347
+EV+A+V+D GS + GF+G+D P+ V PS G + G + Y+ +S
Sbjct: 9 DEVSAIVIDPGSKWTRIGFSGEDIPKCVLPSYCGEFSDGRRLFG----EEYI---YKSNP 61
Query: 348 GILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTE 482
G + +K I +G V NWD +W + +L+ P EHP+L+TE
Sbjct: 62 G-MEIKNAIRNGWVENWDVTVDLWRYGLEQQLKTNPLEHPILITE 105
Score = 29.5 bits (63), Expect = 0.68
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +1
Query: 493 NPKANREXMTQIMFETFXTPAMYVXIXAVLSLYASGR 603
NP NR + MFE+ PA Y+ + +ASG+
Sbjct: 109 NPPENRVKTLETMFESLRCPATYLAKQETCAAFASGK 145
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 63.3 bits (147), Expect = 4e-11
Identities = 33/101 (32%), Positives = 60/101 (59%), Gaps = 1/101 (0%)
Frame = +3
Query: 183 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTL 362
LV+DNGS +AG+ G+ P+ VF ++V R R + + + + VG++ + G ++
Sbjct: 27 LVIDNGSWQLRAGWGGEKDPKLVFDNLVSRYRDR----KLSRTSTLVGNDTLIEVGSRSI 82
Query: 363 -KYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTE 482
+ P E +++NWD ME++ +TF +L + EHP+ +TE
Sbjct: 83 ARSPFERNVISNWDLMEQVLDYTFL-KLGIDRMEHPICMTE 122
Score = 27.9 bits (59), Expect = 2.1
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +1
Query: 493 NPKANREXMTQIMFETFXTPAMYVXIXAVLSLY 591
NP R MT+++FE + P++ I + S Y
Sbjct: 126 NPTYVRSTMTELLFELYNAPSVAYGIDGLFSFY 158
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 57.6 bits (133), Expect = 2e-09
Identities = 32/107 (29%), Positives = 57/107 (53%), Gaps = 2/107 (1%)
Frame = +3
Query: 168 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKR 347
EE+ +LV+D GS + G+AG+++P + PS + GV + ++ YV DE Q
Sbjct: 8 EEIPSLVIDPGSCWTRFGYAGEESPMTILPS------YYGVRSDVTGRNKYVVDELQIHA 61
Query: 348 GI--LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTE 482
I + +K +GI+ +W+ W +L+V P E+ +++TE
Sbjct: 62 PIPGMEVKNGKSNGIIQDWESTLYTWERGLKEKLQVNPTEYAMMITE 108
>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1517
Score = 31.1 bits (67), Expect = 0.22
Identities = 16/48 (33%), Positives = 26/48 (54%)
Frame = +3
Query: 228 GDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYP 371
G+ PRA F ++ P H G+++ M KD G+E S +G + + P
Sbjct: 502 GNQNPRATFVPLLCLPEHGGMVISM--KDWIGGEEFMSPKGFKSPRTP 547
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 29.9 bits (64), Expect = 0.51
Identities = 19/55 (34%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
Frame = -1
Query: 325 PT*ESFCPI-PTITP*WRGLPTIEGNTARGASSPAKPALHIPEPLSTTNAATSSS 164
PT S P+ PT+ P P N S P PL+TTN TS+S
Sbjct: 401 PTGNSTTPVTPTVPPTSSSTPLTTTNCTTSTSVPYTSTPVTSTPLATTNCTTSTS 455
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 28.3 bits (60), Expect = 1.6
Identities = 26/104 (25%), Positives = 47/104 (45%), Gaps = 4/104 (3%)
Frame = +3
Query: 183 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTL 362
+V+DNG+ KAGFAG P+ + R + G + ++G+E + TL
Sbjct: 8 IVLDNGAYHIKAGFAGGKV--VEIPNCLTRSKD-------GNR-LFLGNELANCNDFTTL 57
Query: 363 KYPIEH--GIVTNWDDMEKIWHHTFYNELRVAPE--EHPVLLTE 482
++ H G + +W +W N + P ++ +LLT+
Sbjct: 58 QFRRAHEKGYLVHWSTETAVWDLVMRNVGVMEPSMADYSLLLTQ 101
>SPAC20G8.05c |cdc15||cell division control protein
Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
Length = 927
Score = 28.3 bits (60), Expect = 1.6
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = -2
Query: 336 VPHLLHKSPSVPYRPSRPDGGAFPRSRGTR 247
+ L+ K+PS PY SRP A S TR
Sbjct: 306 IDQLISKAPSYPYSSSRPSASASLASSPTR 335
>SPCC622.02 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
Length = 127
Score = 27.1 bits (57), Expect = 3.6
Identities = 23/60 (38%), Positives = 28/60 (46%)
Frame = -3
Query: 365 FEGQDTSFALCLISYIRVLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHTGAIVYY 186
F G +F CLI++IR +SH D EHG II C T L G I+YY
Sbjct: 47 FAGLGIAFIYCLIAFIRE-MSHPSSR-------KDTMEHGL-PIILCST-LMLVGNILYY 96
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 26.6 bits (56), Expect = 4.8
Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Frame = -1
Query: 328 SPT*ESFC--PIPTITP*WRGLPTIEGNTARGASSPAKPAL 212
S T +SF P+PT P LPT NT + P+ PAL
Sbjct: 64 SNTPKSFAAPPVPTGAP---SLPTSSNNTQQAEERPSMPAL 101
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 26.2 bits (55), Expect = 6.3
Identities = 15/57 (26%), Positives = 16/57 (28%)
Frame = +3
Query: 720 PXPTXLXEXSPPXAGXXXPXXXPTGXIXXXPXXXXXXXAXPXPXXXXXXPXXXPXPP 890
P P L +PP P P G P A P P P P P
Sbjct: 418 PTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAP 474
>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
Tor2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2337
Score = 25.8 bits (54), Expect = 8.4
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = -3
Query: 365 FEGQDTSFALCLISYIRVLLSHTDHHA 285
+EG+DT+ +Y+R++L TD A
Sbjct: 74 YEGEDTTRITRFANYLRIILPGTDQKA 100
>SPBC1A4.10c |pmc1|SPBP23A10.01c, med14|mediator complex subunit
Pmc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 879
Score = 25.8 bits (54), Expect = 8.4
Identities = 13/54 (24%), Positives = 27/54 (50%)
Frame = +1
Query: 421 IIPSTMSCVSPPRNTQSCSLRLPLNPKANREXMTQIMFETFXTPAMYVXIXAVL 582
++ S+ S +SPPR+ ++ + LN + + + ++ F T + V A L
Sbjct: 436 VLSSSASPLSPPRHLRAAEKNIALNTQPPAQILNRLYFFCIQTQLLEVAQCAEL 489
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 25.8 bits (54), Expect = 8.4
Identities = 7/21 (33%), Positives = 13/21 (61%)
Frame = +3
Query: 369 PIEHGIVTNWDDMEKIWHHTF 431
PI+ G V +W+ ++ W H +
Sbjct: 113 PIQRGRVVDWEALKAFWKHLY 133
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,679,041
Number of Sequences: 5004
Number of extensions: 52576
Number of successful extensions: 141
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 452494940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -