Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP12_F_D01
         (929 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    32   0.10 
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    31   0.23 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    24   1.1  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    29   1.2  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    28   2.2  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 32.3 bits (70), Expect = 0.10
 Identities = 11/20 (55%), Positives = 11/20 (55%)
 Frame = +3

Query: 867 PPXTPPXTTXXXXPPPPPPP 926
           PP  PP       PPPPPPP
Sbjct: 763 PPPPPPGVAGAGPPPPPPPP 782



 Score = 31.5 bits (68), Expect = 0.18
 Identities = 11/20 (55%), Positives = 11/20 (55%)
 Frame = +3

Query: 867 PPXTPPXTTXXXXPPPPPPP 926
           PP  PP       PPPPPPP
Sbjct: 762 PPPPPPPGVAGAGPPPPPPP 781



 Score = 29.5 bits (63), Expect = 0.71
 Identities = 11/23 (47%), Positives = 11/23 (47%)
 Frame = +3

Query: 858 PXRPPXTPPXTTXXXXPPPPPPP 926
           P  PP  P        PPPPPPP
Sbjct: 761 PPPPPPPPGVAGAGPPPPPPPPP 783



 Score = 29.1 bits (62), Expect = 0.93
 Identities = 11/23 (47%), Positives = 11/23 (47%)
 Frame = +3

Query: 858 PXRPPXTPPXTTXXXXPPPPPPP 926
           P   P  PP       PPPPPPP
Sbjct: 746 PAPIPVPPPAPIMGGPPPPPPPP 768



 Score = 28.7 bits (61), Expect = 1.2
 Identities = 11/25 (44%), Positives = 11/25 (44%)
 Frame = +3

Query: 852 TXPXRPPXTPPXTTXXXXPPPPPPP 926
           T    P   PP       PPPPPPP
Sbjct: 743 TPAPAPIPVPPPAPIMGGPPPPPPP 767


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 31.1 bits (67), Expect = 0.23
 Identities = 11/20 (55%), Positives = 11/20 (55%)
 Frame = +3

Query: 867 PPXTPPXTTXXXXPPPPPPP 926
           PP  PP       PPPPPPP
Sbjct: 11  PPPPPPGFEPPSQPPPPPPP 30



 Score = 28.3 bits (60), Expect = 1.6
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = +3

Query: 402 PXXPXXFPPPPXXXPPPPP 458
           P  P  F PP    PPPPP
Sbjct: 12  PPPPPGFEPPSQPPPPPPP 30



 Score = 27.5 bits (58), Expect = 2.8
 Identities = 10/20 (50%), Positives = 10/20 (50%)
 Frame = +3

Query: 867 PPXTPPXTTXXXXPPPPPPP 926
           PP  PP        PPPPPP
Sbjct: 10  PPPPPPPGFEPPSQPPPPPP 29


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 23.8 bits (49), Expect(2) = 1.1
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +3

Query: 906 PPPPPPP 926
           PPPPPPP
Sbjct: 311 PPPPPPP 317



 Score = 23.4 bits (48), Expect(2) = 1.1
 Identities = 9/22 (40%), Positives = 9/22 (40%)
 Frame = +3

Query: 858 PXRPPXTPPXTTXXXXPPPPPP 923
           P  PP  PP       PP  PP
Sbjct: 251 PAPPPIPPPSNGTVSSPPNSPP 272



 Score = 23.0 bits (47), Expect(2) = 8.3
 Identities = 8/20 (40%), Positives = 10/20 (50%)
 Frame = +3

Query: 864 RPPXTPPXTTXXXXPPPPPP 923
           +PP     +     PPPPPP
Sbjct: 324 KPPIGNGSSNSSLPPPPPPP 343



 Score = 21.0 bits (42), Expect(2) = 8.3
 Identities = 6/6 (100%), Positives = 6/6 (100%)
 Frame = +3

Query: 909 PPPPPP 926
           PPPPPP
Sbjct: 361 PPPPPP 366


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 12/34 (35%), Positives = 13/34 (38%)
 Frame = +3

Query: 360  PXXXPPXXGXXGFXPXXPXXFPPPPXXXPPPPPT 461
            P   PP        P      PPPP    PPPP+
Sbjct: 1686 PVSTPPVRPQSAAPPQMSAPTPPPPPMSVPPPPS 1719



 Score = 25.8 bits (54), Expect = 8.7
 Identities = 10/23 (43%), Positives = 10/23 (43%)
 Frame = +3

Query: 852  TXPXRPPXTPPXTTXXXXPPPPP 920
            T P RP    P       PPPPP
Sbjct: 1689 TPPVRPQSAAPPQMSAPTPPPPP 1711


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 27.9 bits (59), Expect = 2.2
 Identities = 10/20 (50%), Positives = 10/20 (50%)
 Frame = +3

Query: 867 PPXTPPXTTXXXXPPPPPPP 926
           P  TP        PPPPPPP
Sbjct: 225 PTYTPKQADPLPAPPPPPPP 244



 Score = 26.2 bits (55), Expect = 6.6
 Identities = 10/23 (43%), Positives = 10/23 (43%)
 Frame = +3

Query: 858 PXRPPXTPPXTTXXXXPPPPPPP 926
           P  PP   P        PPPPPP
Sbjct: 221 PEIPPTYTPKQADPLPAPPPPPP 243


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 978,796
Number of Sequences: 5004
Number of extensions: 9423
Number of successful extensions: 166
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 471335896
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)