Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP12_F_C24
         (895 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    24   1.6  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    24   1.6  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   6.6  

>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 12/63 (19%), Positives = 32/63 (50%)
 Frame = +2

Query: 524 LFDNYHKNVIRPEFVTPNEETEQTTYINTILATGPIRSLITFLVNKGITQLNEYPEQVEL 703
           +FD+  +  +RP +++P     Q      ++A   + +L+  ++    T+   YP++ ++
Sbjct: 608 IFDSASRTAVRPRYISP---ASQVCIAAALIALQIVLTLVWMIIEPPGTRF-FYPDRKQV 663

Query: 704 LRK 712
           + K
Sbjct: 664 ILK 666


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 12/63 (19%), Positives = 32/63 (50%)
 Frame = +2

Query: 524 LFDNYHKNVIRPEFVTPNEETEQTTYINTILATGPIRSLITFLVNKGITQLNEYPEQVEL 703
           +FD+  +  +RP +++P     Q      ++A   + +L+  ++    T+   YP++ ++
Sbjct: 698 IFDSASRTAVRPRYISP---ASQVCIAAALIALQIVLTLVWMIIEPPGTRF-FYPDRKQV 753

Query: 704 LRK 712
           + K
Sbjct: 754 ILK 756


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 22.2 bits (45), Expect = 6.6
 Identities = 9/22 (40%), Positives = 11/22 (50%), Gaps = 1/22 (4%)
 Frame = -3

Query: 260 LCLFAGKCFELCSLAD-QSHDC 198
           LC +   CF LC   D  + DC
Sbjct: 736 LCRYEAHCFALCHCCDFDACDC 757


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 196,353
Number of Sequences: 438
Number of extensions: 4112
Number of successful extensions: 10
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 28904421
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)