Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP12_F_C23
(935 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X67337-1|CAA47752.1| 551|Homo sapiens Human pre-mRNA cleavage f... 35 0.37
X67336-1|CAA47751.1| 551|Homo sapiens HPBRII-7 protein. 35 0.37
AK223568-1|BAD97288.1| 551|Homo sapiens cleavage and polyadenyl... 35 0.37
BC005000-1|AAH05000.1| 478|Homo sapiens CPSF6 protein protein. 35 0.49
BC000714-1|AAH00714.1| 588|Homo sapiens CPSF6 protein protein. 35 0.49
BC040943-1|AAH40943.1| 498|Homo sapiens WAS protein family, mem... 33 2.0
AL096774-6|CAC18518.1| 498|Homo sapiens WAS protein family, mem... 33 2.0
AB026542-1|BAA81795.1| 498|Homo sapiens WASP-family protein pro... 33 2.0
>X67337-1|CAA47752.1| 551|Homo sapiens Human pre-mRNA cleavage
factor I 68 kDa subunit protein.
Length = 551
Score = 35.1 bits (77), Expect = 0.37
Identities = 26/91 (28%), Positives = 26/91 (28%)
Frame = +2
Query: 326 GPXXXGPPKXGTXXPPXFGFSPXXGPPXXXXPXXXXXFXPPXKXGKXXGXF*KKXXPXKK 505
GP PP PP P GPP P PP G
Sbjct: 222 GPGGPPPPFPAGQTPPRPPLGPP-GPPGPPGPPPPGQVLPPPLAGPPNRGDRPPPPVLFP 280
Query: 506 KXPFXGPPXXPXGXGPXXXPLFYXPPTGGAP 598
PF PP P GP Y PP G P
Sbjct: 281 GQPFGQPPLGPLPPGPPPPVPGYGPPPGPPP 311
Score = 34.7 bits (76), Expect = 0.49
Identities = 30/103 (29%), Positives = 32/103 (31%), Gaps = 2/103 (1%)
Frame = +2
Query: 323 FGPXXXGPPKXGTXXP-PXFGFSPXXGPPXXXXPXXXXXFXPPXKXGKXXGXF*KKXXPX 499
FG GP G P P +G P PP P F PP G P
Sbjct: 284 FGQPPLGPLPPGPPPPVPGYGPPPGPPPPQQGPPPPPGPF-PPRPPGPLGPPLTLAPPPH 342
Query: 500 KKKXPFXGPPXXPXGXGPXXXPLFYXPPT-GGAPFXKXXGXFP 625
GPP P P F+ PPT G P G P
Sbjct: 343 -----LPGPPPGAPPPAPHVNPAFFPPPTNSGMPTSDSRGPPP 380
Score = 30.7 bits (66), Expect = 8.0
Identities = 30/105 (28%), Positives = 31/105 (29%), Gaps = 2/105 (1%)
Frame = +2
Query: 275 PKGSAGNLTDXXXAXXFGPXXXGPPKXGTXXPP--XFGFSPXXGPPXXXXPXXXXXFXPP 448
P G G P GPP G PP F P PP P P
Sbjct: 243 PPGPPGPPGPPPPGQVLPPPLAGPPNRGDRPPPPVLFPGQPFGQPPLGPLPPGPP--PPV 300
Query: 449 XKXGKXXGXF*KKXXPXKKKXPFXGPPXXPXGXGPXXXPLFYXPP 583
G G + P PF PP P GP PL PP
Sbjct: 301 PGYGPPPGPPPPQQGPPPPPGPF--PPRPP---GPLGPPLTLAPP 340
>X67336-1|CAA47751.1| 551|Homo sapiens HPBRII-7 protein.
Length = 551
Score = 35.1 bits (77), Expect = 0.37
Identities = 26/91 (28%), Positives = 26/91 (28%)
Frame = +2
Query: 326 GPXXXGPPKXGTXXPPXFGFSPXXGPPXXXXPXXXXXFXPPXKXGKXXGXF*KKXXPXKK 505
GP PP PP P GPP P PP G
Sbjct: 222 GPGGPPPPFPAGQTPPRPPLGPP-GPPGPPGPPPPGQVLPPPLAGPPNRGDRPPPPVLFP 280
Query: 506 KXPFXGPPXXPXGXGPXXXPLFYXPPTGGAP 598
PF PP P GP Y PP G P
Sbjct: 281 GQPFGQPPLGPLPPGPPPPVPGYGPPPGPPP 311
Score = 34.7 bits (76), Expect = 0.49
Identities = 30/103 (29%), Positives = 32/103 (31%), Gaps = 2/103 (1%)
Frame = +2
Query: 323 FGPXXXGPPKXGTXXP-PXFGFSPXXGPPXXXXPXXXXXFXPPXKXGKXXGXF*KKXXPX 499
FG GP G P P +G P PP P F PP G P
Sbjct: 284 FGQPPLGPLPPGPPPPVPGYGPPPGPPPPQQGPPPPPGPF-PPRPPGPLGPPLTLAPPPH 342
Query: 500 KKKXPFXGPPXXPXGXGPXXXPLFYXPPT-GGAPFXKXXGXFP 625
GPP P P F+ PPT G P G P
Sbjct: 343 -----LPGPPPGAPPPAPHVNPAFFPPPTNSGMPTSDSRGPPP 380
Score = 30.7 bits (66), Expect = 8.0
Identities = 30/105 (28%), Positives = 31/105 (29%), Gaps = 2/105 (1%)
Frame = +2
Query: 275 PKGSAGNLTDXXXAXXFGPXXXGPPKXGTXXPP--XFGFSPXXGPPXXXXPXXXXXFXPP 448
P G G P GPP G PP F P PP P P
Sbjct: 243 PPGPPGPPGPPPPGQVLPPPLAGPPNRGDRPPPPVLFPGQPFGQPPLGPLPPGPP--PPV 300
Query: 449 XKXGKXXGXF*KKXXPXKKKXPFXGPPXXPXGXGPXXXPLFYXPP 583
G G + P PF PP P GP PL PP
Sbjct: 301 PGYGPPPGPPPPQQGPPPPPGPF--PPRPP---GPLGPPLTLAPP 340
>AK223568-1|BAD97288.1| 551|Homo sapiens cleavage and
polyadenylation specific factor 6, 68 kD subunit variant
protein.
Length = 551
Score = 35.1 bits (77), Expect = 0.37
Identities = 26/91 (28%), Positives = 26/91 (28%)
Frame = +2
Query: 326 GPXXXGPPKXGTXXPPXFGFSPXXGPPXXXXPXXXXXFXPPXKXGKXXGXF*KKXXPXKK 505
GP PP PP P GPP P PP G
Sbjct: 222 GPGGPPPPFPAGQTPPRPPLGPP-GPPGPPGPPPPGQVLPPPLAGPPNRGDRPPPPVLFP 280
Query: 506 KXPFXGPPXXPXGXGPXXXPLFYXPPTGGAP 598
PF PP P GP Y PP G P
Sbjct: 281 GQPFGQPPLGPLPPGPPPPVPGYGPPPGPPP 311
Score = 34.7 bits (76), Expect = 0.49
Identities = 30/103 (29%), Positives = 32/103 (31%), Gaps = 2/103 (1%)
Frame = +2
Query: 323 FGPXXXGPPKXGTXXP-PXFGFSPXXGPPXXXXPXXXXXFXPPXKXGKXXGXF*KKXXPX 499
FG GP G P P +G P PP P F PP G P
Sbjct: 284 FGQPPLGPLPPGPPPPVPGYGPPPGPPPPQQGPPPPPGPF-PPRPPGPLGPPLTLAPPPH 342
Query: 500 KKKXPFXGPPXXPXGXGPXXXPLFYXPPT-GGAPFXKXXGXFP 625
GPP P P F+ PPT G P G P
Sbjct: 343 -----LPGPPPGAPPPAPHVNPAFFPPPTNSGMPTSDSRGPPP 380
Score = 30.7 bits (66), Expect = 8.0
Identities = 30/105 (28%), Positives = 31/105 (29%), Gaps = 2/105 (1%)
Frame = +2
Query: 275 PKGSAGNLTDXXXAXXFGPXXXGPPKXGTXXPP--XFGFSPXXGPPXXXXPXXXXXFXPP 448
P G G P GPP G PP F P PP P P
Sbjct: 243 PPGPPGPPGPPPPGQVLPPPLAGPPNRGDRPPPPVLFPGQPFGQPPLGPLPPGPP--PPV 300
Query: 449 XKXGKXXGXF*KKXXPXKKKXPFXGPPXXPXGXGPXXXPLFYXPP 583
G G + P PF PP P GP PL PP
Sbjct: 301 PGYGPPPGPPPPQQGPPPPPGPF--PPRPP---GPLGPPLTLAPP 340
>BC005000-1|AAH05000.1| 478|Homo sapiens CPSF6 protein protein.
Length = 478
Score = 34.7 bits (76), Expect = 0.49
Identities = 30/103 (29%), Positives = 32/103 (31%), Gaps = 2/103 (1%)
Frame = +2
Query: 323 FGPXXXGPPKXGTXXP-PXFGFSPXXGPPXXXXPXXXXXFXPPXKXGKXXGXF*KKXXPX 499
FG GP G P P +G P PP P F PP G P
Sbjct: 211 FGQPPLGPLPPGPPPPVPGYGPPPGPPPPQQGPPPPPGPF-PPRPPGPLGPPLTLAPPPH 269
Query: 500 KKKXPFXGPPXXPXGXGPXXXPLFYXPPT-GGAPFXKXXGXFP 625
GPP P P F+ PPT G P G P
Sbjct: 270 -----LPGPPPGAPPPAPHVNPAFFPPPTNSGMPTSDSRGPPP 307
Score = 32.7 bits (71), Expect = 2.0
Identities = 28/88 (31%), Positives = 29/88 (32%), Gaps = 2/88 (2%)
Frame = +2
Query: 326 GPXXXGPPKXGTXXPP--XFGFSPXXGPPXXXXPXXXXXFXPPXKXGKXXGXF*KKXXPX 499
GP GPP G PP F P PP P P G G + P
Sbjct: 187 GPPLAGPPNRGDRPPPPVLFPGQPFGQPPLGPLPPGPP--PPVPGYGPPPGPPPPQQGPP 244
Query: 500 KKKXPFXGPPXXPXGXGPXXXPLFYXPP 583
PF PP P GP PL PP
Sbjct: 245 PPPGPF--PPRPP---GPLGPPLTLAPP 267
>BC000714-1|AAH00714.1| 588|Homo sapiens CPSF6 protein protein.
Length = 588
Score = 34.7 bits (76), Expect = 0.49
Identities = 30/103 (29%), Positives = 32/103 (31%), Gaps = 2/103 (1%)
Frame = +2
Query: 323 FGPXXXGPPKXGTXXP-PXFGFSPXXGPPXXXXPXXXXXFXPPXKXGKXXGXF*KKXXPX 499
FG GP G P P +G P PP P F PP G P
Sbjct: 321 FGQPPLGPLPPGPPPPVPGYGPPPGPPPPQQGPPPPPGPF-PPRPPGPLGPPLTLAPPPH 379
Query: 500 KKKXPFXGPPXXPXGXGPXXXPLFYXPPT-GGAPFXKXXGXFP 625
GPP P P F+ PPT G P G P
Sbjct: 380 -----LPGPPPGAPPPAPHVNPAFFPPPTNSGMPTSDSRGPPP 417
Score = 30.7 bits (66), Expect = 8.0
Identities = 30/105 (28%), Positives = 31/105 (29%), Gaps = 2/105 (1%)
Frame = +2
Query: 275 PKGSAGNLTDXXXAXXFGPXXXGPPKXGTXXPP--XFGFSPXXGPPXXXXPXXXXXFXPP 448
P G G P GPP G PP F P PP P P
Sbjct: 280 PPGPPGPPGPPPPGQVLPPPLAGPPNRGDRPPPPVLFPGQPFGQPPLGPLPPGPP--PPV 337
Query: 449 XKXGKXXGXF*KKXXPXKKKXPFXGPPXXPXGXGPXXXPLFYXPP 583
G G + P PF PP P GP PL PP
Sbjct: 338 PGYGPPPGPPPPQQGPPPPPGPF--PPRPP---GPLGPPLTLAPP 377
>BC040943-1|AAH40943.1| 498|Homo sapiens WAS protein family, member
2 protein.
Length = 498
Score = 32.7 bits (71), Expect = 2.0
Identities = 31/115 (26%), Positives = 34/115 (29%), Gaps = 5/115 (4%)
Frame = +2
Query: 269 PVPKGSAGNLTDXXXAXXFGPXXXGP-PKXGTXXPPXFGFSPXXGPPXXXXPXXXXXFXP 445
PV L + P P P G+ P GF+P PP P P
Sbjct: 277 PVDNQRGSGLAGPKRSSVVSPSHPPPAPPLGSPPGPKPGFAPPPAPPPPPPPMIGIPPPP 336
Query: 446 PXKXGKXXGXF*KKXXPXKKKXP-FXGPPXXPXGXG---PXXXPLFYXPPTGGAP 598
P G P P F PP P P P PTGGAP
Sbjct: 337 PPVGFGSPGTPPPPSPPSFPPHPDFAAPPPPPPPPAADYPTLPPPPLSQPTGGAP 391
>AL096774-6|CAC18518.1| 498|Homo sapiens WAS protein family, member
2 protein.
Length = 498
Score = 32.7 bits (71), Expect = 2.0
Identities = 31/115 (26%), Positives = 34/115 (29%), Gaps = 5/115 (4%)
Frame = +2
Query: 269 PVPKGSAGNLTDXXXAXXFGPXXXGP-PKXGTXXPPXFGFSPXXGPPXXXXPXXXXXFXP 445
PV L + P P P G+ P GF+P PP P P
Sbjct: 277 PVDNQRGSGLAGPKRSSVVSPSHPPPAPPLGSPPGPKPGFAPPPAPPPPPPPMIGIPPPP 336
Query: 446 PXKXGKXXGXF*KKXXPXKKKXP-FXGPPXXPXGXG---PXXXPLFYXPPTGGAP 598
P G P P F PP P P P PTGGAP
Sbjct: 337 PPVGFGSPGTPPPPSPPSFPPHPDFAAPPPPPPPPAADYPTLPPPPLSQPTGGAP 391
>AB026542-1|BAA81795.1| 498|Homo sapiens WASP-family protein
protein.
Length = 498
Score = 32.7 bits (71), Expect = 2.0
Identities = 31/115 (26%), Positives = 34/115 (29%), Gaps = 5/115 (4%)
Frame = +2
Query: 269 PVPKGSAGNLTDXXXAXXFGPXXXGP-PKXGTXXPPXFGFSPXXGPPXXXXPXXXXXFXP 445
PV L + P P P G+ P GF+P PP P P
Sbjct: 277 PVDNQRGSGLAGPKRSSVVSPSHPPPAPPLGSPPGPKPGFAPPPAPPPPPPPMIGIPPPP 336
Query: 446 PXKXGKXXGXF*KKXXPXKKKXP-FXGPPXXPXGXG---PXXXPLFYXPPTGGAP 598
P G P P F PP P P P PTGGAP
Sbjct: 337 PPVGFGSPGTPPPPSPPSFPPHPDFAAPPPPPPPPAADYPTLPPPPLSQPTGGAP 391
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 76,245,399
Number of Sequences: 237096
Number of extensions: 1278158
Number of successful extensions: 1848
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1222
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1634
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 12270013262
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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