Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP12_F_C23
         (935 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL032652-4|CAB63398.1|  486|Caenorhabditis elegans Hypothetical ...    31   1.2  
AF000298-11|AAM97960.1|  518|Caenorhabditis elegans Prion-like-(...    30   2.1  
AF000298-10|AAM97961.1|  539|Caenorhabditis elegans Prion-like-(...    30   2.1  
AF000298-8|AAC48255.2|  524|Caenorhabditis elegans Prion-like-(q...    30   2.1  
U41557-6|AAA83307.1|  589|Caenorhabditis elegans Collagen sequen...    30   2.7  

>AL032652-4|CAB63398.1|  486|Caenorhabditis elegans Hypothetical
           protein Y63D3A.5 protein.
          Length = 486

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 25/88 (28%), Positives = 27/88 (30%), Gaps = 2/88 (2%)
 Frame = +2

Query: 341 GPPKXGTXXPPXFGFSPXXGPPXXXXPXXXXXFXPPXKXGKXXGXF*KKXXPXKKKXPFX 520
           GPP   +  P  F   P  GPP    P     F  P   G   G              + 
Sbjct: 366 GPPPPVSSAPGNFAPPPQSGPPGAFAP-PPSAFGAPQGPGGPGGYGPPPPGGPGAPGSYG 424

Query: 521 GPPXXPXGXG--PXXXPLFYXPPTGGAP 598
            P   P G G  P   P  Y PP  G P
Sbjct: 425 PPQGGPGGFGPPPPGGPGAYGPPPTGFP 452


>AF000298-11|AAM97960.1|  518|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform b protein.
          Length = 518

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 22/83 (26%), Positives = 25/83 (30%)
 Frame = +2

Query: 344 PPKXGTXXPPXFGFSPXXGPPXXXXPXXXXXFXPPXKXGKXXGXF*KKXXPXKKKXPFXG 523
           PP  G+  PP  G  P   PP    P       PP   G           P  ++     
Sbjct: 283 PPAGGSPPPPRAGSPPPPPPPRGSPP--TGSLPPPQAGGSPPPAGTGSPPPPPRQKRQAP 340

Query: 524 PPXXPXGXGPXXXPLFYXPPTGG 592
               P G  P   P    PP GG
Sbjct: 341 ERSPPTGSPPTGSPPTGRPPRGG 363


>AF000298-10|AAM97961.1|  539|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform c protein.
          Length = 539

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 22/83 (26%), Positives = 25/83 (30%)
 Frame = +2

Query: 344 PPKXGTXXPPXFGFSPXXGPPXXXXPXXXXXFXPPXKXGKXXGXF*KKXXPXKKKXPFXG 523
           PP  G+  PP  G  P   PP    P       PP   G           P  ++     
Sbjct: 304 PPAGGSPPPPRAGSPPPPPPPRGSPP--TGSLPPPQAGGSPPPAGTGSPPPPPRQKRQAP 361

Query: 524 PPXXPXGXGPXXXPLFYXPPTGG 592
               P G  P   P    PP GG
Sbjct: 362 ERSPPTGSPPTGSPPTGRPPRGG 384


>AF000298-8|AAC48255.2|  524|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform a protein.
          Length = 524

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 22/83 (26%), Positives = 25/83 (30%)
 Frame = +2

Query: 344 PPKXGTXXPPXFGFSPXXGPPXXXXPXXXXXFXPPXKXGKXXGXF*KKXXPXKKKXPFXG 523
           PP  G+  PP  G  P   PP    P       PP   G           P  ++     
Sbjct: 289 PPAGGSPPPPRAGSPPPPPPPRGSPP--TGSLPPPQAGGSPPPAGTGSPPPPPRQKRQAP 346

Query: 524 PPXXPXGXGPXXXPLFYXPPTGG 592
               P G  P   P    PP GG
Sbjct: 347 ERSPPTGSPPTGSPPTGRPPRGG 369


>U41557-6|AAA83307.1|  589|Caenorhabditis elegans Collagen sequence
           x-hybridizingprotein 1 protein.
          Length = 589

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 32/113 (28%), Positives = 34/113 (30%), Gaps = 3/113 (2%)
 Frame = +2

Query: 269 PVPKGSAGNLTDXXXAXXFGPXXXGPPKXGTXXP-PXFGFSPXXGPPXXXXPXXXXXFXP 445
           P P G +G          F P    PP  G   P    G  P  GPP    P       P
Sbjct: 182 PGPFGPSGAPPSGGPPGPFNPSE-APPSGGPTGPFDPSGAPPSGGPPGPFNPSG----AP 236

Query: 446 PXKXGKXXGXF*KKXXPXK--KKXPFXGPPXXPXGXGPXXXPLFYXPPTGGAP 598
           P   G   G F     P       PF      P G  P        PP+GG P
Sbjct: 237 P--SGGPPGPFDPSGAPPSGGPPGPFNPSGAPPSGGPPGPFDPSGAPPSGGPP 287



 Score = 28.3 bits (60), Expect = 8.3
 Identities = 29/112 (25%), Positives = 31/112 (27%), Gaps = 2/112 (1%)
 Frame = +2

Query: 269 PVPKGSAGNLTDXXXAXXFGPXXXGPPKXGTXXPPXFGFSPXXGPPXXXXPXXXXXFXPP 448
           P P   +G          F P    PP  G   P    F P   PP    P        P
Sbjct: 302 PGPFDPSGAQPSGGPPGPFNPSG-APPSGGPPGP----FDPSGAPPSGGPPGPFNPSGAP 356

Query: 449 XKXGKXXGXF*KKXXPXK--KKXPFXGPPXXPXGXGPXXXPLFYXPPTGGAP 598
              G   G F     P       PF      P G  P        PP+GG P
Sbjct: 357 PSGGPP-GPFDPSGAPPSGGPPGPFDPSGAPPSGGPPGPFDPSGAPPSGGPP 407



 Score = 28.3 bits (60), Expect = 8.3
 Identities = 29/112 (25%), Positives = 32/112 (28%), Gaps = 2/112 (1%)
 Frame = +2

Query: 269 PVPKGSAGNLTDXXXAXXFGPXXXGPPKXGTXXPPXFGFSPXXGPPXXXXPXXXXXFXPP 448
           P P   +G          F P    PP  G   P    F+P   PP    P        P
Sbjct: 392 PGPFDPSGAPPSGGPPGPFNPSG-APPSGGPPGP----FNPSGAPPSGGPPGPFNPSGAP 446

Query: 449 XKXGKXXGXF*KKXXPXK--KKXPFXGPPXXPXGXGPXXXPLFYXPPTGGAP 598
              G   G F     P       PF      P G  P        PP+GG P
Sbjct: 447 PSGGPP-GPFNPSGAPPSGGPPGPFNPSGAPPSGGPPGPFDPSGAPPSGGPP 497


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,007,587
Number of Sequences: 27780
Number of extensions: 174045
Number of successful extensions: 311
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 176
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 256
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2412704140
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)