Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP12_F_C21
         (884 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23H4.09 |cdb4||curved DNA-binding protein Cdb4|Schizosacchar...    71   3e-13
SPBC23E6.05 |arx1||ribosomal export complex Arx1 |Schizosaccharo...    43   5e-05
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M...    27   4.7  

>SPAC23H4.09 |cdb4||curved DNA-binding protein
           Cdb4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 381

 Score = 70.5 bits (165), Expect = 3e-13
 Identities = 50/177 (28%), Positives = 64/177 (36%), Gaps = 2/177 (1%)
 Frame = +1

Query: 130 VXXYXXAGXXVXRVLEXVXAKCVPDASAXXXCXFGXXLVLXXXXXVFKKXXXSXXGXAFS 309
           V  Y  AG     V++ V   C P A     C  G  L+      V++    +  G AF 
Sbjct: 22  VNKYKIAGEVSQNVIKKVVELCQPGAKIYDICVRGDELLNEAIKKVYRTKD-AYKGIAFP 80

Query: 310 TCVSVXXCXCHFSPIASXPD--YXLKKGXXAXIXLGAHXDGFXXXXXXXXXXXXXXXXXR 483
           T VS      H SP+ S P+    LK G    I LGAH DGF                  
Sbjct: 81  TAVSPNDMAAHLSPLKSDPEANLALKSGDVVKILLGAHIDGFASLVATTTVVSEEPVTGP 140

Query: 484 XXXXXXXXXXXXXXXXXXXKPGXXXYAVXEAXQKLXAEYGCXPLXGMLSPHLKRSVL 654
                              KPG   + V +   K+   YGC P+ GMLS   +R V+
Sbjct: 141 AADVIAAASAALKAAQRTIKPGNTNWQVTDIVDKIATSYGCKPVAGMLSHQQEREVI 197


>SPBC23E6.05 |arx1||ribosomal export complex Arx1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 417

 Score = 43.2 bits (97), Expect = 5e-05
 Identities = 29/103 (28%), Positives = 44/103 (42%), Gaps = 6/103 (5%)
 Frame = +1

Query: 139 YXXAGXXVXRVLEXVXAKCVPDASAXXXCXFGXXLVLXXXXXVFKKXXXSXXGXAFSTCV 318
           Y  AG  V +    V ++CVP AS      +G  L+      ++K       G A  T +
Sbjct: 21  YRDAGALVSKAFHQVASRCVPGASTREISSYGDNLLHEYKSSIYKSQRFEK-GIAEPTSI 79

Query: 319 SVXXCXCHFSP-----IASXPD-YXLKKGXXAXIXLGAHXDGF 429
            V  C  +++P     IA   + Y L+ G    I +G H DG+
Sbjct: 80  CVNNCAYNYAPGPESVIAGNDNSYHLQVGDVTKISMGLHFDGY 122


>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 500

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 14/42 (33%), Positives = 16/42 (38%)
 Frame = -3

Query: 867 GTXGXRXGXGGHXXRXGXXGQXGAXXXARGGXXGXXRNSQSI 742
           G+ G R G GG     G  G  G     RGG      N  S+
Sbjct: 448 GSRGGRGGFGGRGGFGGRGGFGGGRGRGRGGARSGNPNRGSV 489


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,480,978
Number of Sequences: 5004
Number of extensions: 13889
Number of successful extensions: 23
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 444486180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)