Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP12_F_C21
         (884 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006696-3|AAF39984.1|  391|Caenorhabditis elegans Hypothetical ...    71   1e-12
Z54238-1|CAA90992.2|  281|Caenorhabditis elegans Hypothetical pr...    30   2.5  

>AC006696-3|AAF39984.1|  391|Caenorhabditis elegans Hypothetical
           protein W08E12.7 protein.
          Length = 391

 Score = 70.9 bits (166), Expect = 1e-12
 Identities = 47/183 (25%), Positives = 65/183 (35%), Gaps = 3/183 (1%)
 Frame = +1

Query: 109 TXAXXLVVXXYXXAGXXVXRVLEXVXAKCVPDASAXXXCXFGXXLVLXXXXXVFKKXXXS 288
           T A   VV  Y  A      VL+ V A     A A   C  G  L+L     ++KK    
Sbjct: 22  TLANDAVVTKYQVAAEITNAVLKEVLANIKEGAIAGDLCDLGDKLILEKTGKLYKKEKNF 81

Query: 289 XXGXAFSTCVSVXXCXCHFSPIASXPDYXLKKGXXAXIXLGAHXDGF---XXXXXXXXXX 459
             G A  TC+S+  C CH++P+ S     LK G    + LG H DG              
Sbjct: 82  TKGIAMPTCISIDNCICHYTPLKSEAPVVLKNGQVVKVDLGTHIDGLIATAAHTVVVGAS 141

Query: 460 XXXXXXXRXXXXXXXXXXXXXXXXXXXKPGXXXYAVXEAXQKLXAEYGCXPLXGMLSPHL 639
                  +                   +P      + +   K  AE+G  P+  MLS  L
Sbjct: 142 KDNKVTGKLADLLRGTHDALEIAIRSLRPDTENTTITKNIDKTAAEFGLTPIENMLSHQL 201

Query: 640 KRS 648
           +R+
Sbjct: 202 ERN 204


>Z54238-1|CAA90992.2|  281|Caenorhabditis elegans Hypothetical
           protein T28C6.1 protein.
          Length = 281

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 19/69 (27%), Positives = 21/69 (30%)
 Frame = -2

Query: 880 GRXGXDXGXPXXSXGAXXXGXGXXTGXGXXXGQGGXPXGXEEQPEHTXXYGVKGGXXQGR 701
           G  G   G      G    G G   G G    QGG       Q      +G +GG   G 
Sbjct: 162 GGSGGQGGWGGSQDGGSQGGWGGQNGGGQGGNQGGGGGRGGNQGGEQGGWGGQGGSQGGS 221

Query: 700 DXGXXEGXG 674
             G   G G
Sbjct: 222 QGGSQGGWG 230


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,682,372
Number of Sequences: 27780
Number of extensions: 99382
Number of successful extensions: 221
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 217
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2234373834
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)